| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ygjK [H]
Identifier: 157370212
GI number: 157370212
Start: 2153496
End: 2155868
Strand: Reverse
Name: ygjK [H]
Synonym: Spro_1970
Alternate gene names: 157370212
Gene position: 2155868-2153496 (Counterclockwise)
Preceding gene: 157370213
Following gene: 157370208
Centisome position: 39.57
GC content: 57.4
Gene sequence:
>2373_bases ATGAATATGATTAATAAACTGCCGCCTTTGGCCATAGCTATCACGCTGGCAATATCAGGCTGCTCTTCTCACCCGGCGAA TGAGAACGCCTTGCGGGCAGCGGCCTATAAAAACGTCATCAATCGCAGCGGCGCGCCACACTACATGCTCGACTACGATT TTGATGAACACCAACGTTTTAACCCGTTCTTTGATCTGGGGGCCTGGCATGGCCACTTGCTGCCGGACGGCCCGGAAGGT ATCGGCGGTTTCCCCGGCCCGGCGCTGCTTACCGAAGAATACATCAACTTTATGGCCGACAACTTCGATCGGCTGAGCCT GTATAAAAATGGGGAGAAGGTAAACTTCAGCATGACCGCCTACAGCATCCCGGGGGCGCTTGTCCAACAACTCAGCGCGC CGGGGATCCAGGTCAATCTGACGCTGCGTTTCGCTACCGCACGCACCTCGCTGCTGGAAACCCAAATCATCACCGATACG CCGCTGGAGCTGGTGTGGGACGGTGCGCTGTTGGAAAAATACTACGCCAAGGAGCAGAAGCCACAGTCACCTGAGACCAT CGAGCAGGCATTTCCGGGCTACACGCGGCACATTCTACCGACGGCGGACGGCCTGCGGGTCACCTTTGGCAAAGTGCGAG CCTCTTCGCAACTGATGACCTCCGGCCAGTCTGAATATCAGATTCATAAATCACTGCCGCAGCAAACGACGGTGAACGGC CATCAGTTTATCGCCAAAACCAATATCAAAGGCTCCACCACCCTCTACACCACCTACTCTCACCTGCTCACCGCCGCTGA GGTACAGCAGGAACAGGGCAAGATTGCCGCTATCCTCGCCAACCCGCAGCAGTATATGAATGCTTCCGCGCAACGCTGGG AAAACTATCTCAGCAAGGGGCTTACCAACCCACACGCCACCCAGGCACAGGAGCGCGTGGCGGTCAAAGCGATAGAAACC TTGAATGGCAACTGGCGCGGCGCGGCCGGGGCGATGAAGTTTGATTCGGTGACGCCTTCGGTGACCGGACGCTGGTTCTC CGGCAACCAGACCTGGCCCTGGGATACCTGGAAACAGGCCTACGCCATGGCGCATTTTAATCCTGACGTCGCCAAGGATA ATATCCGTGCGGTGTTCGCCTTCCAAATCCAGCCGGATGACCCACTGCGCCCATGGGATGCCGGCTTTATCCCGGATCTG ATCGCCTATAACCCCAGCCCGGAACGCGGCGGCGACGGCAGCAACTGGAATGAGCGCAATACCAAACCCAGCCTGGCGGC CTGGGCGGTAATGGAGGTGTATAACACCACCGGCGATAAACAGTGGCTGGCCGAGATGTATCCGAAGCTGGTCGCCTACC ACAACTGGTGGCTGCATAACCGCGACCATAACGGCAACGGCGTGCCGGAATATGGCGCGACGCGGGATAAGGCGCACAAT ACGCCAGATGGTCGGATGCTGTTCACCGTTAAGCGCGGGCAGCAGGAGAAAACCCTCGCCGGACTGAACAACTATGACCG GGTTGTTCGCTCCGGGCACTATGACAACATCGAAATCCCGGCCCAGGTTGCCGCCTCCTGGGAGTCTGGACGTGACGATG CCGCTGCCTTTGGTTTTATCGACCCGGATCAGCTGGCCCGCTACCTGGCACAAGGTGGAAAGCGGCAGGACTGGCAGGTG AAATTTGCGGAAAACCGTGCGGCAGACGGCACTCTGCTCGGCTATTCCTTACTGCAGGAGTCGGTGGATCAAGCCAGCTA CATGTACAGCGACAACAAATACCTGGCCAAAATGGCCGATATTCTGGGCCACAGCGCCGATGCCGCCACCTTCCGCAGCA AGGCCGACAAGCTGGCGGATTACATCAATAGCTGCATGTTCGATTCGTCCAGTGGCTTCTTCTACGACATTCGCATTGAA GATAAACCCCTGCCCAATGGCTGTGCCGGCAAACCCATTGTCGAACGCGGCAAAGGGCCGGAAGGTTGGTCCCCCTTATT TAATGGCGCAGCCAGCCAGCAACATGCCGATGCGGTGGTGAAGGTGATGAAGGACTCGCGTGAGTTCAATACCTACGTCC CACTAGGTACGGCGGCACTCACCAACCCGGCGTTTGGCGCAGATATTTACTGGCGTGGACGAGTCTGGGTAGATCAACTG TATTTCGGGCTAAAGGGTATGGAAAGCTATGGCTACCGTGCCGACGCCGTCGCCATGGCACAGGCCTTCTTCAACCACGC CGATGGACTGATCACCGACGGGCCAATCCGCGAAAACTATAATCCGCTGACCGGCATGCAACAGGGCGCACCGAATTTCT CCTGGAGCGCAGCTCACCTCTACATGCTGTATAACGACTTTTTCACCCGATAA
Upstream 100 bases:
>100_bases CGCTGGACAGTAAATTCTATATGACCAACGACAGCACCGACGCCAGCAACTCGGTGTTTCTGATGCAGTATTTCTATTGG TAACCGACAGGGCAATCCTA
Downstream 100 bases:
>100_bases TCTCGCCGTTACCCTGCCAGAACGCCCAACTGGCAGGGGTTTCGCTCGGGCTAGGATTTAATCGGGATCACCAGTACGTC AACGTTCAACTGGTTGATCG
Product: putative glycosyl hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MNMINKLPPLAIAITLAISGCSSHPANENALRAAAYKNVINRSGAPHYMLDYDFDEHQRFNPFFDLGAWHGHLLPDGPEG IGGFPGPALLTEEYINFMADNFDRLSLYKNGEKVNFSMTAYSIPGALVQQLSAPGIQVNLTLRFATARTSLLETQIITDT PLELVWDGALLEKYYAKEQKPQSPETIEQAFPGYTRHILPTADGLRVTFGKVRASSQLMTSGQSEYQIHKSLPQQTTVNG HQFIAKTNIKGSTTLYTTYSHLLTAAEVQQEQGKIAAILANPQQYMNASAQRWENYLSKGLTNPHATQAQERVAVKAIET LNGNWRGAAGAMKFDSVTPSVTGRWFSGNQTWPWDTWKQAYAMAHFNPDVAKDNIRAVFAFQIQPDDPLRPWDAGFIPDL IAYNPSPERGGDGSNWNERNTKPSLAAWAVMEVYNTTGDKQWLAEMYPKLVAYHNWWLHNRDHNGNGVPEYGATRDKAHN TPDGRMLFTVKRGQQEKTLAGLNNYDRVVRSGHYDNIEIPAQVAASWESGRDDAAAFGFIDPDQLARYLAQGGKRQDWQV KFAENRAADGTLLGYSLLQESVDQASYMYSDNKYLAKMADILGHSADAATFRSKADKLADYINSCMFDSSSGFFYDIRIE DKPLPNGCAGKPIVERGKGPEGWSPLFNGAASQQHADAVVKVMKDSREFNTYVPLGTAALTNPAFGADIYWRGRVWVDQL YFGLKGMESYGYRADAVAMAQAFFNHADGLITDGPIRENYNPLTGMQQGAPNFSWSAAHLYMLYNDFFTR
Sequences:
>Translated_790_residues MNMINKLPPLAIAITLAISGCSSHPANENALRAAAYKNVINRSGAPHYMLDYDFDEHQRFNPFFDLGAWHGHLLPDGPEG IGGFPGPALLTEEYINFMADNFDRLSLYKNGEKVNFSMTAYSIPGALVQQLSAPGIQVNLTLRFATARTSLLETQIITDT PLELVWDGALLEKYYAKEQKPQSPETIEQAFPGYTRHILPTADGLRVTFGKVRASSQLMTSGQSEYQIHKSLPQQTTVNG HQFIAKTNIKGSTTLYTTYSHLLTAAEVQQEQGKIAAILANPQQYMNASAQRWENYLSKGLTNPHATQAQERVAVKAIET LNGNWRGAAGAMKFDSVTPSVTGRWFSGNQTWPWDTWKQAYAMAHFNPDVAKDNIRAVFAFQIQPDDPLRPWDAGFIPDL IAYNPSPERGGDGSNWNERNTKPSLAAWAVMEVYNTTGDKQWLAEMYPKLVAYHNWWLHNRDHNGNGVPEYGATRDKAHN TPDGRMLFTVKRGQQEKTLAGLNNYDRVVRSGHYDNIEIPAQVAASWESGRDDAAAFGFIDPDQLARYLAQGGKRQDWQV KFAENRAADGTLLGYSLLQESVDQASYMYSDNKYLAKMADILGHSADAATFRSKADKLADYINSCMFDSSSGFFYDIRIE DKPLPNGCAGKPIVERGKGPEGWSPLFNGAASQQHADAVVKVMKDSREFNTYVPLGTAALTNPAFGADIYWRGRVWVDQL YFGLKGMESYGYRADAVAMAQAFFNHADGLITDGPIRENYNPLTGMQQGAPNFSWSAAHLYMLYNDFFTR >Mature_790_residues MNMINKLPPLAIAITLAISGCSSHPANENALRAAAYKNVINRSGAPHYMLDYDFDEHQRFNPFFDLGAWHGHLLPDGPEG IGGFPGPALLTEEYINFMADNFDRLSLYKNGEKVNFSMTAYSIPGALVQQLSAPGIQVNLTLRFATARTSLLETQIITDT PLELVWDGALLEKYYAKEQKPQSPETIEQAFPGYTRHILPTADGLRVTFGKVRASSQLMTSGQSEYQIHKSLPQQTTVNG HQFIAKTNIKGSTTLYTTYSHLLTAAEVQQEQGKIAAILANPQQYMNASAQRWENYLSKGLTNPHATQAQERVAVKAIET LNGNWRGAAGAMKFDSVTPSVTGRWFSGNQTWPWDTWKQAYAMAHFNPDVAKDNIRAVFAFQIQPDDPLRPWDAGFIPDL IAYNPSPERGGDGSNWNERNTKPSLAAWAVMEVYNTTGDKQWLAEMYPKLVAYHNWWLHNRDHNGNGVPEYGATRDKAHN TPDGRMLFTVKRGQQEKTLAGLNNYDRVVRSGHYDNIEIPAQVAASWESGRDDAAAFGFIDPDQLARYLAQGGKRQDWQV KFAENRAADGTLLGYSLLQESVDQASYMYSDNKYLAKMADILGHSADAATFRSKADKLADYINSCMFDSSSGFFYDIRIE DKPLPNGCAGKPIVERGKGPEGWSPLFNGAASQQHADAVVKVMKDSREFNTYVPLGTAALTNPAFGADIYWRGRVWVDQL YFGLKGMESYGYRADAVAMAQAFFNHADGLITDGPIRENYNPLTGMQQGAPNFSWSAAHLYMLYNDFFTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789462, Length=790, Percent_Identity=73.1645569620253, Blast_Score=1220, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR001661 [H]
Pfam domain/function: PF01204 Trehalase [H]
EC number: NA
Molecular weight: Translated: 87998; Mature: 87998
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMINKLPPLAIAITLAISGCSSHPANENALRAAAYKNVINRSGAPHYMLDYDFDEHQRF CCCHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC NPFFDLGAWHGHLLPDGPEGIGGFPGPALLTEEYINFMADNFDRLSLYKNGEKVNFSMTA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEE YSIPGALVQQLSAPGIQVNLTLRFATARTSLLETQIITDTPLELVWDGALLEKYYAKEQK EECCHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHEECCCCHHHEECHHHHHHHHHHHCC PQSPETIEQAFPGYTRHILPTADGLRVTFGKVRASSQLMTSGQSEYQIHKSLPQQTTVNG CCCCHHHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC HQFIAKTNIKGSTTLYTTYSHLLTAAEVQQEQGKIAAILANPQQYMNASAQRWENYLSKG CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHCHHHHHHHHHHHHC LTNPHATQAQERVAVKAIETLNGNWRGAAGAMKFDSVTPSVTGRWFSGNQTWPWDTWKQA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCHHHHHH YAMAHFNPDVAKDNIRAVFAFQIQPDDPLRPWDAGFIPDLIAYNPSPERGGDGSNWNERN HHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC TKPSLAAWAVMEVYNTTGDKQWLAEMYPKLVAYHNWWLHNRDHNGNGVPEYGATRDKAHN CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCC TPDGRMLFTVKRGQQEKTLAGLNNYDRVVRSGHYDNIEIPAQVAASWESGRDDAAAFGFI CCCCCEEEEEECCCCHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEECCC DPDQLARYLAQGGKRQDWQVKFAENRAADGTLLGYSLLQESVDQASYMYSDNKYLAKMAD CHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHH ILGHSADAATFRSKADKLADYINSCMFDSSSGFFYDIRIEDKPLPNGCAGKPIVERGKGP HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCC EGWSPLFNGAASQQHADAVVKVMKDSREFNTYVPLGTAALTNPAFGADIYWRGRVWVDQL CCCCHHHCCCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHCCCCCCCCEEECCCHHHHHH YFGLKGMESYGYRADAVAMAQAFFNHADGLITDGPIRENYNPLTGMQQGAPNFSWSAAHL HHHHHCHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEE YMLYNDFFTR EEEHHHHHCC >Mature Secondary Structure MNMINKLPPLAIAITLAISGCSSHPANENALRAAAYKNVINRSGAPHYMLDYDFDEHQRF CCCHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC NPFFDLGAWHGHLLPDGPEGIGGFPGPALLTEEYINFMADNFDRLSLYKNGEKVNFSMTA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEE YSIPGALVQQLSAPGIQVNLTLRFATARTSLLETQIITDTPLELVWDGALLEKYYAKEQK EECCHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHEECCCCHHHEECHHHHHHHHHHHCC PQSPETIEQAFPGYTRHILPTADGLRVTFGKVRASSQLMTSGQSEYQIHKSLPQQTTVNG CCCCHHHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC HQFIAKTNIKGSTTLYTTYSHLLTAAEVQQEQGKIAAILANPQQYMNASAQRWENYLSKG CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHCHHHHHHHHHHHHC LTNPHATQAQERVAVKAIETLNGNWRGAAGAMKFDSVTPSVTGRWFSGNQTWPWDTWKQA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCHHHHHH YAMAHFNPDVAKDNIRAVFAFQIQPDDPLRPWDAGFIPDLIAYNPSPERGGDGSNWNERN HHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC TKPSLAAWAVMEVYNTTGDKQWLAEMYPKLVAYHNWWLHNRDHNGNGVPEYGATRDKAHN CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCC TPDGRMLFTVKRGQQEKTLAGLNNYDRVVRSGHYDNIEIPAQVAASWESGRDDAAAFGFI CCCCCEEEEEECCCCHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEECCC DPDQLARYLAQGGKRQDWQVKFAENRAADGTLLGYSLLQESVDQASYMYSDNKYLAKMAD CHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHH ILGHSADAATFRSKADKLADYINSCMFDSSSGFFYDIRIEDKPLPNGCAGKPIVERGKGP HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCC EGWSPLFNGAASQQHADAVVKVMKDSREFNTYVPLGTAALTNPAFGADIYWRGRVWVDQL CCCCHHHCCCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHCCCCCCCCEEECCCHHHHHH YFGLKGMESYGYRADAVAMAQAFFNHADGLITDGPIRENYNPLTGMQQGAPNFSWSAAHL HHHHHCHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEE YMLYNDFFTR EEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]