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The map label for this gene is rutC

Identifier: 157370063

GI number: 157370063

Start: 2004552

End: 2004938

Strand: Reverse

Name: rutC

Synonym: Spro_1821

Alternate gene names: 157370063

Gene position: 2004938-2004552 (Counterclockwise)

Preceding gene: 157370064

Following gene: 157370062

Centisome position: 36.8

GC content: 58.14

Gene sequence:

>387_bases
ATGCCAAAAACCATTATTACCCCGCCGGGCACCGGCAAACCGCTGGCCCCTTTCGTGCCCGGCACCCTGGCCGACGGCGT
GGTTTACGTCTCGGGCACGCTGGCATTCGATAAAAACAATAACGTGGTGCACGTCGGTGACGCGGCAGCGCAAACCCGTC
ACGTGCTGGAGACCATCAAAAGCGTGATTGAAACCGCCGGTGGCTGCATGGACGACGTGACCTTTAACTCGATATTCCTC
ACCGACTGGCAAAACTATGCCGCCATCAATCAGGTGTATGCAGAGTATTTCCCCGGCGACAAACCGGCGCGCTACTGCAT
TCAGTGCGGCCTGGTAAAACCGGACGCCCTGATTGAAATTGCCACCGTGGCCCATATCGGCCGCTGA

Upstream 100 bases:

>100_bases
CGTCGACAGTTTCTGTAATACGCTCGCCGCCCCGCTCAGCCAGACGGCATGAGTGTTGCACGCCTTTAACCAAAATTGAA
TTTTCACCAGGAGCGCCACT

Downstream 100 bases:

>100_bases
GTCATTATCCGCAGAGGACTGAGCATGTATTTTGAGATTTTGGGAAAAGACACGCCGTTGGCACCCACGCTGGTGCTGTC
TGCCGGGCTGGGTGGCGCAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPKTIITPPGTGKPLAPFVPGTLADGVVYVSGTLAFDKNNNVVHVGDAAAQTRHVLETIKSVIETAGGCMDDVTFNSIFL
TDWQNYAAINQVYAEYFPGDKPARYCIQCGLVKPDALIEIATVAHIGR

Sequences:

>Translated_128_residues
MPKTIITPPGTGKPLAPFVPGTLADGVVYVSGTLAFDKNNNVVHVGDAAAQTRHVLETIKSVIETAGGCMDDVTFNSIFL
TDWQNYAAINQVYAEYFPGDKPARYCIQCGLVKPDALIEIATVAHIGR
>Mature_127_residues
PKTIITPPGTGKPLAPFVPGTLADGVVYVSGTLAFDKNNNVVHVGDAAAQTRHVLETIKSVIETAGGCMDDVTFNSIFLT
DWQNYAAINQVYAEYFPGDKPARYCIQCGLVKPDALIEIATVAHIGR

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=77.34375, Blast_Score=218, Evalue=1e-58,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=29.1338582677165, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=29.1338582677165, Blast_Score=60, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320899, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=36, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_SERP5 (A8GCT4)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001478052.1
- ProteinModelPortal:   A8GCT4
- SMR:   A8GCT4
- STRING:   A8GCT4
- GeneID:   5605418
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1821
- eggNOG:   COG0251
- HOGENOM:   HBG695954
- OMA:   VYAEYFP
- ProtClustDB:   CLSK879923
- BioCyc:   SPRO399741:SPRO_1821-MONOMER
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13694; Mature: 13563

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTIITPPGTGKPLAPFVPGTLADGVVYVSGTLAFDKNNNVVHVGDAAAQTRHVLETIK
CCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHH
SVIETAGGCMDDVTFNSIFLTDWQNYAAINQVYAEYFPGDKPARYCIQCGLVKPDALIEI
HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHH
ATVAHIGR
HHHHHCCC
>Mature Secondary Structure 
PKTIITPPGTGKPLAPFVPGTLADGVVYVSGTLAFDKNNNVVHVGDAAAQTRHVLETIK
CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHH
SVIETAGGCMDDVTFNSIFLTDWQNYAAINQVYAEYFPGDKPARYCIQCGLVKPDALIEI
HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHH
ATVAHIGR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA