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The map label for this gene is ydcN [H]

Identifier: 157370058

GI number: 157370058

Start: 2000217

End: 2000792

Strand: Reverse

Name: ydcN [H]

Synonym: Spro_1816

Alternate gene names: 157370058

Gene position: 2000792-2000217 (Counterclockwise)

Preceding gene: 157370060

Following gene: 157370056

Centisome position: 36.72

GC content: 59.03

Gene sequence:

>576_bases
ATGGGCAATACAGTGAACAACGGTAAACATGAAGCGCCCAAGGTACTGCAATACCTGAGCAGCAACCTGCGCGGTTATCG
CCAGCAGGCGGGGCTTAGCCAGGTGGCGTTGGCAGAAAAATCCGACGTCAGCCGCCGCATGCTGGCCGGCATTGAGGCCG
GTGACCGTAACGTTAGTTTAGCGGTGCTGGATAAGCTGGCCGACGCGCTGAATATTTCCTTCACCGATCTGATCCAGGCG
CCCGAAACACGCGGTAGCCATCTGGTGGGTGAACTGGCCTGGCAAGGAGTACAACCGGCAAGCCAGGCGCTGTTCGCCGC
CAGCGTGCCCGCACGCCAACGGGTTGAACTGTGGGAATGGACGCTGATGCCGGGCGAGCACTACGACTCGGTACCGGATG
CCGAAGGCTGGAGCGAAATTATCTACGTGATCGCCGGTAGCCTGACGCTGCTACTGGAACAGCAAACCCTGACGCTGGAG
GCCGGACAAACCCAGGTGTTCAACAGCGATCAGCACTATGCCTACGCCAACCGCAGCGAGCAACCCTTGCGTTTTATCCG
CAACGTTACTTTCTAG

Upstream 100 bases:

>100_bases
GGTTGAAATAAAGGATTTTTTTACTGCGGACACCGGCTTGCCCTTCCTGCTGGGTGCAATATAATGCACAGATCCTGCCA
GTATGAGGTAAAGCCTGCGG

Downstream 100 bases:

>100_bases
CCATCGGCACTGAGTTTCAGCCAATCGGCCAGCCGGGCCAGAGCACTGCCCGGCCGGATTTCCTGCGGCGTCAGCAAACA
GTAACCGCTGCCGTCTGGCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MGNTVNNGKHEAPKVLQYLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDLIQA
PETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEWTLMPGEHYDSVPDAEGWSEIIYVIAGSLTLLLEQQTLTLE
AGQTQVFNSDQHYAYANRSEQPLRFIRNVTF

Sequences:

>Translated_191_residues
MGNTVNNGKHEAPKVLQYLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDLIQA
PETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEWTLMPGEHYDSVPDAEGWSEIIYVIAGSLTLLLEQQTLTLE
AGQTQVFNSDQHYAYANRSEQPLRFIRNVTF
>Mature_190_residues
GNTVNNGKHEAPKVLQYLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDLIQAP
ETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEWTLMPGEHYDSVPDAEGWSEIIYVIAGSLTLLLEQQTLTLEA
GQTQVFNSDQHYAYANRSEQPLRFIRNVTF

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=30.2325581395349, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21112; Mature: 20981

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNTVNNGKHEAPKVLQYLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AVLDKLADALNISFTDLIQAPETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEW
HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHEE
TLMPGEHYDSVPDAEGWSEIIYVIAGSLTLLLEQQTLTLEAGQTQVFNSDQHYAYANRSE
EECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCEEEEECCCEEEECCCCCEEECCCCC
QPLRFIRNVTF
HHHHHHHHCCC
>Mature Secondary Structure 
GNTVNNGKHEAPKVLQYLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AVLDKLADALNISFTDLIQAPETRGSHLVGELAWQGVQPASQALFAASVPARQRVELWEW
HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHEE
TLMPGEHYDSVPDAEGWSEIIYVIAGSLTLLLEQQTLTLEAGQTQVFNSDQHYAYANRSE
EECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCEEEEECCCEEEECCCCCEEECCCCC
QPLRFIRNVTF
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]