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The map label for this gene is cspB [H]

Identifier: 157369959

GI number: 157369959

Start: 1886218

End: 1886439

Strand: Direct

Name: cspB [H]

Synonym: Spro_1716

Alternate gene names: 157369959

Gene position: 1886218-1886439 (Clockwise)

Preceding gene: 157369958

Following gene: 157369960

Centisome position: 34.62

GC content: 44.59

Gene sequence:

>222_bases
ATGTTTAAAAATACTGTGTTACAAATGGGCCGTGTGAAATGGTTTGATCAGGCTGCAGGCTATGGTTTTATTTCACCGGT
AGATGGTAGCGACGAAATCTATGTAAGCCGTCGTTCTATCGCCAATACTAAAAATAAATCGTTAAACGAAGGTCAGAACG
TTGAGTTCTCGATCTATCGCAGCTCCCACGGGCTGTCAGCGGCAGACGTTATCGCGTTCTGA

Upstream 100 bases:

>100_bases
CACGAGAGGTTTGTTACGAAAAACTTTAGGATGGGCTGGTAGCGTCCAACAATAATAAAAATGACGTTGTTAAGGATGCT
CAAGTAAAAGGATATAAGTT

Downstream 100 bases:

>100_bases
CCCACCCCCTTCCTCGCCAGTGCCGGTGCCGCCACCCCAAGCACTGGCGAAGATAAATTCCCCGATATCCACTATTATCA
AGCGATTGCTCAATCACTTC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MFKNTVLQMGRVKWFDQAAGYGFISPVDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRSSHGLSAADVIAF

Sequences:

>Translated_73_residues
MFKNTVLQMGRVKWFDQAAGYGFISPVDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRSSHGLSAADVIAF
>Mature_73_residues
MFKNTVLQMGRVKWFDQAAGYGFISPVDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRSSHGLSAADVIAF

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=48.4375, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=46.031746031746, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=50, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=43.75, Blast_Score=63, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8121; Mature: 8121

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNTVLQMGRVKWFDQAAGYGFISPVDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYR
CCCCHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEE
SSHGLSAADVIAF
CCCCCCCCCEECC
>Mature Secondary Structure
MFKNTVLQMGRVKWFDQAAGYGFISPVDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYR
CCCCHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEE
SSHGLSAADVIAF
CCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA