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The map label for this gene is cspA [H]

Identifier: 157369958

GI number: 157369958

Start: 1885787

End: 1885996

Strand: Direct

Name: cspA [H]

Synonym: Spro_1715

Alternate gene names: 157369958

Gene position: 1885787-1885996 (Clockwise)

Preceding gene: 157369956

Following gene: 157369959

Centisome position: 34.61

GC content: 49.05

Gene sequence:

>210_bases
ATGTCTAAGAAAACGGGTCAAGTGAAGTGGTTCAATGAAAGCAAAGGTTTTGGTTTTATTGAACAGAACGACGGTGGTAA
AGATGTATTCGTACACTTCTCCGCAATCGCGACCGACGGTTTCAAAACTTTGGCTGAAGGCCAACGTGTTGAGTACACCG
TAGAAGACAGCCCGCGCGGGCCGGCTGCCGCCAACGTTGTTGCTCTGTAA

Upstream 100 bases:

>100_bases
AAAGACGAACCTTCTAAGTACCTCCCATAAGTAATGTTTCCAAGAACGGCCAAAATTGCCTTATGGCAGGTTTTGTATAT
ATTTAAAAGGTAAATAAGTA

Downstream 100 bases:

>100_bases
ATAAACAGGGAATAACGTAAAGAGAACTTAATACAACCATGATGAAGCGTTTGCGCTGAATCATTGCGGAAGATATTAAG
TTCAACAAGCCCGCCATAGT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKKTGQVKWFNESKGFGFIEQNDGGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRGPAAANVVAL

Sequences:

>Translated_69_residues
MSKKTGQVKWFNESKGFGFIEQNDGGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRGPAAANVVAL
>Mature_68_residues
SKKTGQVKWFNESKGFGFIEQNDGGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRGPAAANVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=72.463768115942, Blast_Score=106, Evalue=4e-25,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=69.5652173913043, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=64.7058823529412, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=64.1791044776119, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=63.2352941176471, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=62.1212121212121, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=48.4375, Blast_Score=72, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7480; Mature: 7349

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTGQVKWFNESKGFGFIEQNDGGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRG
CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCHHHCCCCEEEEEECCCCCC
PAAANVVAL
CCCEEEEEC
>Mature Secondary Structure 
SKKTGQVKWFNESKGFGFIEQNDGGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRG
CCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCHHHCCCCEEEEEECCCCCC
PAAANVVAL
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]