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The map label for this gene is rarA [H]

Identifier: 157369928

GI number: 157369928

Start: 1846207

End: 1847550

Strand: Direct

Name: rarA [H]

Synonym: Spro_1685

Alternate gene names: 157369928

Gene position: 1846207-1847550 (Clockwise)

Preceding gene: 157369927

Following gene: 157369929

Centisome position: 33.88

GC content: 57.89

Gene sequence:

>1344_bases
GTGAGTAATATGTCGCTCGATTTTTCCCAGAATGAATTCCAGCCGTTGGCCGCGCGGATGCGGCCGACCACGCTGGCACA
GTATATCGGCCAGCAACATCTGCTGGCCGCCGGCAAGCCTTTGCCGCGTGCAATCGAGGCGGGGCAACTGCACTCGATGA
TTCTGTGGGGGCCACCGGGCACCGGGAAAACGACGCTGGCAGAATTGATCGGTCGTTATGGTCAGGCGGACGTCGAGCGT
ATTTCTGCCGTCACGTCCGGGATCAAAGAGATCCGCGAGGCGATTGAGCGTGCACGCCAAAACCGTGACGCCGGTCGCCG
CACTATCCTGTTTGTCGATGAGGTCCATCGCTTCAACAAAAGCCAGCAGGATGCCTTCCTGCCGCACATTGAAGACGGCA
CCATCACCTTTATCGGCGCCACCACCGAAAACCCGTCTTTTGAGCTTAACTCGGCGCTGTTGTCACGAGCCCGTGTTTAT
TTGCTGAAGGCACTGACTGCCGAAGATATCAGCCAGGTGCTGGATCAGGCGATGCAGGACAGCAGCCGGGGCTTTGGCGG
CCAGAATATCGAACTGCCGGAAGAGACGCGCCGCATGTTGTCGGAGCTGGTTGGCGGCGACGCTCGTCGGGCGCTGAACA
GCCTGGAGATGATGGCGGACATGGCGGAGATCAACGCCAAAGGCATTCGCGTGTTGACGCCGGAATTACTGAAAGAGGTC
TCTGGCGAACGCAGTGCGCGTTTCGATAATAAAGGCGACCGCTTTTACGATCTGATCTCGGCGCTGCATAAATCGGTGCG
TGGTTCAGCGCCGGATGCTGCGTTGTACTGGTATGCACGTATTATTACCGCCGGGGGCGATCCACTGTATGTGGCGCGCC
GGTTGCTGGCGATTGCTTCTGAAGATGTGGGTAATGCCGACCCGCGTGGCATGCAGGTAGCCATCGCGGCCTGGGACTGC
TTTACCCGCGTCGGCCCGGCGGAAGGCGAAAGGGCTATTGCTCAGGCTATCGTCTATTTGGCCTGCGCGCCAAAAAGCAA
CGCGGTTTACACGGCCTTCAAAGCGGCAATACGTGATGCCAAAGAGATGGCTGATTATGATGTACCCGAGCATCTGCGCA
ATGCGCCAACCAAGCTGATGAAGGAAATGGGGCTGGGTGCAGAATATCGTTACGCTCACGATGAGCCCAATGCCTATGCC
GCCGGCGAGGATTACTTCCCACCCGAAATGGCCAGGACGCGTTACTATCATCCAACCACGCGCGGGCTGGAAGGTAAAAT
TGGTGAAAAGCTGGCATGGCTGGCTGAGCAGGATCAAAATAGCCAGACAAAACGCTACCGCTAG

Upstream 100 bases:

>100_bases
ACGCTGAAAAGCCAGCAGAATGTTGCTGCCGATGCCAGCAAATTTAAATTTACCCCGCCGAAGGGGGTGACGCTGGACGA
CCAGCGCCAGTGAGGTCCGC

Downstream 100 bases:

>100_bases
CGTTGCCGTTGCGGTAAGGTTAGCGGGTATCACTCTTCCTTTATACGGCTATAAATTCAGCCGAATAAAACATCAAATTT
TCTTTCAATAACAATAAGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVER
ISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALTAEDISQVLDQAMQDSSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAKGIRVLTPELLKEV
SGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAIRDAKEMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYA
AGEDYFPPEMARTRYYHPTTRGLEGKIGEKLAWLAEQDQNSQTKRYR

Sequences:

>Translated_447_residues
MSNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVER
ISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALTAEDISQVLDQAMQDSSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAKGIRVLTPELLKEV
SGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAIRDAKEMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYA
AGEDYFPPEMARTRYYHPTTRGLEGKIGEKLAWLAEQDQNSQTKRYR
>Mature_446_residues
SNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVERI
SAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKALTAEDISQVLDQAMQDSSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAKGIRVLTPELLKEVS
GERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAIRDAKEMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAA
GEDYFPPEMARTRYYHPTTRGLEGKIGEKLAWLAEQDQNSQTKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=41.1764705882353, Blast_Score=297, Evalue=2e-80,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=36.6515837104072, Blast_Score=238, Evalue=1e-62,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=87.4720357941834, Blast_Score=813, Evalue=0.0,
Organism=Escherichia coli, GI1786676, Length=196, Percent_Identity=27.0408163265306, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=452, Percent_Identity=40.4867256637168, Blast_Score=305, Evalue=1e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49573; Mature: 49442

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPG
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHCCCCCCEEEEECCCC
TGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLDQAMQD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAKGIRVLTPELLKEV
HCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
SGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAIRDA
CCCCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KEMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGEDYFPPEMARTRYYHPTT
HHHHCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSQTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPG
CCCCCCCCCCHHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHCCCCCCEEEEECCCC
TGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLDQAMQD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAKGIRVLTPELLKEV
HCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
SGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAIRDA
CCCCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KEMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGEDYFPPEMARTRYYHPTT
HHHHCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSQTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]