| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yjiJ [H]
Identifier: 157369802
GI number: 157369802
Start: 1698425
End: 1699582
Strand: Direct
Name: yjiJ [H]
Synonym: Spro_1559
Alternate gene names: 157369802
Gene position: 1698425-1699582 (Clockwise)
Preceding gene: 157369798
Following gene: 157369803
Centisome position: 31.17
GC content: 61.66
Gene sequence:
>1158_bases ATGGCCTTAAGAATTGCCCTGAGTGGTTTTATTGCATTGATCGTAGCCATGGGAATTGGTCGTTTTGCCTTTACCCCACA GGTACCGCTGATGATTGCCGAGCACCAGTTTACCTTGACCGGGGCCGGGCTGGTGGCGGCCATTAACTACCTGGGTTATC TGTGCGGTGCCTATGACGCAATGCGCGCCAGCCGGCATGTTGAACGTCGGCTGTGGCTGGGCGTGTGGGGGGCGGTAATC TTGACCTTGCTTTCGGCCTGGGTGCAGGGCGAATGGTGGCACGGTGCCGTGCGTTTCCTGATTGGTTGGGCCAGCGGCTG GGCGATGGTGCTGGTGGCGGCCTGGACCAACGAACGGCTGGCTCACTATGGCCGGCCGGCGCTCAGTGCGGCGGTCTTCG CCGGGCCGGGTGCCGGGATTTTTATCAGCGGCATGCTGGCGGTAGGCATTCACAGCCTGGCGCTGACGGCGTCTCAGGCC TGGCTGGTGTATGGCGTGTTGGCACTGGTATTGATTGGCGCAATCAGCATTAACCTGCCTAAGGCCGGTGAATTGCATCG TCCTGATGTAGCACCGGAGCCTCTGTTGTTGACTCCGGCGCTGAAGCGGCTGGTATTGAGCTACAGCCTGGCGGGTTTTG GCTATATCCTGCCGGCCACCTTTCTGTCGCAAATGGCCGCCGCACGTTTTCCCGGCAGCGTGTTCGCGCAATTTGTCTGG CCTGTCTTCGGCGGTGCGGCGGTGTTGGGGATTGTCATTGGCATCCTGACCCGTCACAAGCTGACCACCCAAACGCGTCT GGCCATGACTCTGTGGGTACAGGCACTGGGGGTCTTGAGTGCGGAAATCGTGCCTGGGGTGGCCGGACTGGCCTTGGGGG CATTGTTGACCGGCGGTGGCTTCCTCAGCGTGGTGCAGCTGTCGATCCAGCACGGCAGGGAACTGGCACCTAATCATGCG CGTTACATGGCGGGGCTGTTGACCACCGGCTATGCGATTGGTCAGTTGGTCGGCCCGACGCTGTCGGCGCTGTCCACTGC CTTGACCCATCGGTTGGAACCGGCGTTATATGTCGCCGTGGTGGCGCTGATCGTTGCCGGCCTGCTGGTGGTGAATACCC CGACGCGCGAGCTGGCACGAAAACCGACGGCGCTGTGA
Upstream 100 bases:
>100_bases CTCTTTTCGTGATGAACTTGGTGAGTATTATTCAGTTTTTGTGAGTTTAATACTGCGGCATGATACTGGCAACTTTCTTT TAACAGTCTGGATACTCTAC
Downstream 100 bases:
>100_bases TTAAATTCCGTACAAAAAACGTGGAATAGCCGCAGCGGGCCTGATTGTGCTAAATGCGAATATTTCACCTGCGGATGAAG CACAATCGCTGGATAATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MALRIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAAINYLGYLCGAYDAMRASRHVERRLWLGVWGAVI LTLLSAWVQGEWWHGAVRFLIGWASGWAMVLVAAWTNERLAHYGRPALSAAVFAGPGAGIFISGMLAVGIHSLALTASQA WLVYGVLALVLIGAISINLPKAGELHRPDVAPEPLLLTPALKRLVLSYSLAGFGYILPATFLSQMAAARFPGSVFAQFVW PVFGGAAVLGIVIGILTRHKLTTQTRLAMTLWVQALGVLSAEIVPGVAGLALGALLTGGGFLSVVQLSIQHGRELAPNHA RYMAGLLTTGYAIGQLVGPTLSALSTALTHRLEPALYVAVVALIVAGLLVVNTPTRELARKPTAL
Sequences:
>Translated_385_residues MALRIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAAINYLGYLCGAYDAMRASRHVERRLWLGVWGAVI LTLLSAWVQGEWWHGAVRFLIGWASGWAMVLVAAWTNERLAHYGRPALSAAVFAGPGAGIFISGMLAVGIHSLALTASQA WLVYGVLALVLIGAISINLPKAGELHRPDVAPEPLLLTPALKRLVLSYSLAGFGYILPATFLSQMAAARFPGSVFAQFVW PVFGGAAVLGIVIGILTRHKLTTQTRLAMTLWVQALGVLSAEIVPGVAGLALGALLTGGGFLSVVQLSIQHGRELAPNHA RYMAGLLTTGYAIGQLVGPTLSALSTALTHRLEPALYVAVVALIVAGLLVVNTPTRELARKPTAL >Mature_384_residues ALRIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAAINYLGYLCGAYDAMRASRHVERRLWLGVWGAVIL TLLSAWVQGEWWHGAVRFLIGWASGWAMVLVAAWTNERLAHYGRPALSAAVFAGPGAGIFISGMLAVGIHSLALTASQAW LVYGVLALVLIGAISINLPKAGELHRPDVAPEPLLLTPALKRLVLSYSLAGFGYILPATFLSQMAAARFPGSVFAQFVWP VFGGAAVLGIVIGILTRHKLTTQTRLAMTLWVQALGVLSAEIVPGVAGLALGALLTGGGFLSVVQLSIQHGRELAPNHAR YMAGLLTTGYAIGQLVGPTLSALSTALTHRLEPALYVAVVALIVAGLLVVNTPTRELARKPTAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=364, Percent_Identity=28.021978021978, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 40572; Mature: 40441
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALRIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAAINYLGYLCGAYDA CEEEHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHHH MRASRHVERRLWLGVWGAVILTLLSAWVQGEWWHGAVRFLIGWASGWAMVLVAAWTNERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHEEHHHCCHHH AHYGRPALSAAVFAGPGAGIFISGMLAVGIHSLALTASQAWLVYGVLALVLIGAISINLP HHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGELHRPDVAPEPLLLTPALKRLVLSYSLAGFGYILPATFLSQMAAARFPGSVFAQFVW CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH PVFGGAAVLGIVIGILTRHKLTTQTRLAMTLWVQALGVLSAEIVPGVAGLALGALLTGGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCH FLSVVQLSIQHGRELAPNHARYMAGLLTTGYAIGQLVGPTLSALSTALTHRLEPALYVAV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH VALIVAGLLVVNTPTRELARKPTAL HHHHHHHHHHCCCCHHHHHCCCCCC >Mature Secondary Structure ALRIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAAINYLGYLCGAYDA EEEHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHHH MRASRHVERRLWLGVWGAVILTLLSAWVQGEWWHGAVRFLIGWASGWAMVLVAAWTNERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHEEHHHCCHHH AHYGRPALSAAVFAGPGAGIFISGMLAVGIHSLALTASQAWLVYGVLALVLIGAISINLP HHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGELHRPDVAPEPLLLTPALKRLVLSYSLAGFGYILPATFLSQMAAARFPGSVFAQFVW CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH PVFGGAAVLGIVIGILTRHKLTTQTRLAMTLWVQALGVLSAEIVPGVAGLALGALLTGGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCH FLSVVQLSIQHGRELAPNHARYMAGLLTTGYAIGQLVGPTLSALSTALTHRLEPALYVAV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH VALIVAGLLVVNTPTRELARKPTAL HHHHHHHHHHCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]