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The map label for this gene is ecpD [H]

Identifier: 157369763

GI number: 157369763

Start: 1657121

End: 1657804

Strand: Direct

Name: ecpD [H]

Synonym: Spro_1520

Alternate gene names: 157369763

Gene position: 1657121-1657804 (Clockwise)

Preceding gene: 157369762

Following gene: 157369764

Centisome position: 30.41

GC content: 50.29

Gene sequence:

>684_bases
ATGAAAAAAGTGCTTTCTTGTATTTTACTCGCGTTTTCCGTTAATGCTTTTGCCGGCATTCAAGTTGATTCAACGCGCGT
AATTTATAACAGCGGAAGTAAATCCGCATCGCTCTCAATCAGCAATGACAGCGACGACACCTATATGGTGCAAACCTGGC
TGGATACTGGTGATTCAAGCCAGATGCCGAAGAATTTACCGATCGTGGTCACTCCACCTATTTTAAAACTGGCTGCCAAG
AAAGACGCCATTCTGCGTTTTATCTATTCCGGCAGCGGGTTACCGCAGGACAGAGAAAGTCTGCTCTGGGTAAACGTACA
GGAAATACCGCCAACGCCTAAGCAAGATAACGTGCTGCAGGTGGCGATCCGTACCCGAATCAAACTGTTCTACCGTCCTG
AGGCCTTGAAGGCCAACCTGCAACAGCAGGCTGAAGCGCTGAAATGGCAGCGCCAGGGCGGCAATCTGGTGGTCACCAAC
AACGGTCCGCTGTATGTGACGCTGGGCGTTCTGACGCTGAAAAGCGGTGGCAAGAGCTGGAAAGTGAATGCCGATATGGT
GAAACCGCAAGATAGCCTGAAAATTGCTCTGCCACAGGGCGCGCAGTCGGCCGGCAGTATGTCGTTTACCTATATCAACG
ATTACGGCGGCCACACCGAGATTAAGAACGTTGCATTAAATTGA

Upstream 100 bases:

>100_bases
ACGCTACCTTCACCATCGAATACAAATAATTTAATTCGCTGGCAGGATAGATAGAGCTATTGGCCATGGACGGCTAAATT
CTGAGAGTTGAGATATTCCG

Downstream 100 bases:

>100_bases
TTTAAGCCCTTCAAGGAATGAACAAGAAATGGCACATAAAAGAATAACAACCCTCACGCCAAAACGTTTGGTCAGGCTGA
TTAATGGTGTAATTTATTTT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKKVLSCILLAFSVNAFAGIQVDSTRVIYNSGSKSASLSISNDSDDTYMVQTWLDTGDSSQMPKNLPIVVTPPILKLAAK
KDAILRFIYSGSGLPQDRESLLWVNVQEIPPTPKQDNVLQVAIRTRIKLFYRPEALKANLQQQAEALKWQRQGGNLVVTN
NGPLYVTLGVLTLKSGGKSWKVNADMVKPQDSLKIALPQGAQSAGSMSFTYINDYGGHTEIKNVALN

Sequences:

>Translated_227_residues
MKKVLSCILLAFSVNAFAGIQVDSTRVIYNSGSKSASLSISNDSDDTYMVQTWLDTGDSSQMPKNLPIVVTPPILKLAAK
KDAILRFIYSGSGLPQDRESLLWVNVQEIPPTPKQDNVLQVAIRTRIKLFYRPEALKANLQQQAEALKWQRQGGNLVVTN
NGPLYVTLGVLTLKSGGKSWKVNADMVKPQDSLKIALPQGAQSAGSMSFTYINDYGGHTEIKNVALN
>Mature_227_residues
MKKVLSCILLAFSVNAFAGIQVDSTRVIYNSGSKSASLSISNDSDDTYMVQTWLDTGDSSQMPKNLPIVVTPPILKLAAK
KDAILRFIYSGSGLPQDRESLLWVNVQEIPPTPKQDNVLQVAIRTRIKLFYRPEALKANLQQQAEALKWQRQGGNLVVTN
NGPLYVTLGVLTLKSGGKSWKVNADMVKPQDSLKIALPQGAQSAGSMSFTYINDYGGHTEIKNVALN

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=230, Percent_Identity=38.2608695652174, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1790771, Length=221, Percent_Identity=37.10407239819, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786743, Length=229, Percent_Identity=34.9344978165939, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1787171, Length=222, Percent_Identity=35.1351351351351, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789532, Length=223, Percent_Identity=32.7354260089686, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1786936, Length=222, Percent_Identity=32.8828828828829, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788428, Length=227, Percent_Identity=29.5154185022026, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI87082203, Length=222, Percent_Identity=31.0810810810811, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788677, Length=206, Percent_Identity=30.0970873786408, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081806, Length=207, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24825; Mature: 24825

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLSCILLAFSVNAFAGIQVDSTRVIYNSGSKSASLSISNDSDDTYMVQTWLDTGDSS
CHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCC
QMPKNLPIVVTPPILKLAAKKDAILRFIYSGSGLPQDRESLLWVNVQEIPPTPKQDNVLQ
CCCCCCCEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
VAIRTRIKLFYRPEALKANLQQQAEALKWQRQGGNLVVTNNGPLYVTLGVLTLKSGGKSW
EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEEEECCCCEE
KVNADMVKPQDSLKIALPQGAQSAGSMSFTYINDYGGHTEIKNVALN
EEECCEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC
>Mature Secondary Structure
MKKVLSCILLAFSVNAFAGIQVDSTRVIYNSGSKSASLSISNDSDDTYMVQTWLDTGDSS
CHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCC
QMPKNLPIVVTPPILKLAAKKDAILRFIYSGSGLPQDRESLLWVNVQEIPPTPKQDNVLQ
CCCCCCCEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
VAIRTRIKLFYRPEALKANLQQQAEALKWQRQGGNLVVTNNGPLYVTLGVLTLKSGGKSW
EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEEEECCCCEE
KVNADMVKPQDSLKIALPQGAQSAGSMSFTYINDYGGHTEIKNVALN
EEECCEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]