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The map label for this gene is fimD [H]

Identifier: 157369764

GI number: 157369764

Start: 1657833

End: 1660448

Strand: Direct

Name: fimD [H]

Synonym: Spro_1521

Alternate gene names: 157369764

Gene position: 1657833-1660448 (Clockwise)

Preceding gene: 157369763

Following gene: 157369765

Centisome position: 30.43

GC content: 52.98

Gene sequence:

>2616_bases
ATGGCACATAAAAGAATAACAACCCTCACGCCAAAACGTTTGGTCAGGCTGATTAATGGTGTAATTTATTTTTCTGCGGT
GCCATTTTCATTCTCTCATATGGCCATGGCGGAGGAGCAGTTCAACACCTCCTTCATCCATGGCGACGACAACATTGCCC
AGGTGGCAGCGTTGTCCAGCGGCGATGATATCTTGCCAGGCAAATATCCGTTTGATATTTACCTGAATGGTCAGCGTATC
GATCACCGCGAAATCGAATTCAAAAAAGATACCAAAGACACGCCGGTAATGCCTTGCCTGACAGCGCAGGATTACCAGGA
CTACGGCGTTAAACTGCCAGGCGATATGAAAACCGAAGGTGCCGCGCAGTGTTATGCGCTGTCACAGCAAATCTCGGGTG
CCAAGCTGAGCTATGACGCCGCTATACAGCGTATGGATCTGGAAGTGCCGCAGGTGTTTCTGGAACCGCGTCCGCAAGGG
GCTATTTCGCCGAAGGTTTACGATCGCGGGATTAACGCCGGCTTCGTTAACTATAACTTCAGCGGCAACCACAATAATTA
CAGCAATAACGCCAACGATAAAACATCAGACTATTACTTCCTGAGCCTGAACAACGGTCTCAACATTGGTAATTGGCGTT
TGCGCAATAATTCGACGCTGAACCAGCAGTCGGGTGCCGGTACTCATTGGAATACCGTTTCGAGCTGGGCAGAAACTGAC
ATTGTTTCCCTGCGTAGCCGCATGGTGATTGGCCAGACCAACACCAACAACAACGTGTTCGACAGCATCCAGTTCCGCGG
CGTGCAGATTTCCAGCGCCAACGACATGCTGCCGGAAAGCCAGCGCGGCTATGCGCCGGTAGTGCGTGGCGTGGCGTCGA
CCAACGCCCGCGTCGAGATCCGCCAAAACGGCTACACCATATACAGCACCAACGTGCCGCCTGGCCCGTTTGCGCTGACG
GATATTTTCCCAAGTACCCTGAGCGGTAACCTGAACGTAACGGTCATTGAGGCCAACGGTTCGAGAACCACTTTCGTGGT
GCCATTCTCTTCCGTGCCGAACATGCTGCGTGAAGGGATCTGGGACTATCAGATGACTGCCGGTAAGTATCATGACGGCA
CGACCAAATACCAGCCAAAATTTGTGCAAGGCACCTTGTCCCACGGTATGGGGTATGACATTACGCCTTACGGCGGCGTG
CTGGTGGCAGAAAATTACCGTTCTGCGGTGCTGGGTATGGGTAAAAACATGGGTGTTTGGGGGGCGGTTTCTTTTGACAT
GTCCTATTCCGACACCAACCTGGTCAACGGTGATGACAAGCAGGGTGAGAGCTTCCGCTTCCTGTACTCCAAGTCGCTCA
ACGACTGGGGTACTGAATTCCAGATCGCCGGTTACCGTTATTCGACCTCCGGCTACTATGATTTCTCAGATGCGGTTGCG
GAACGCGATCGCTATGAAAACGGCTACTACCGCAATGATTACTACGATGAAAATGACCGTAATCAGGGTGTACCTGACTG
GGCTGAATCACGTCGTCGGACTTATTACACCAGCAAGTTCAACAATAAACGCCAGCGTGTAGAATTGTCGATCAATCAGC
GTATCGCCGGTAACTCAACGCTGTATACCAACGTCAGCAACCAGTCATACTGGGGCGGCTCTGGCCAGGATCGTACGGTT
CAAACCGGCTTTAACAGCAGCTATAAAAACATCAGCTACGGCGTGTTCTATCAAGACAGCCGCAGCAACTACGGTTATAA
AGATCGCAGTATTAACATGACTGTATCTATTCCGTTCAGCTTCTTCAGCAGAGACTCCTCTGATATGACGGCCAGCTTCA
ACGCCGGGCACAGCAAGCAGAGCGGTAATACCTATAGCGCCGGCCTGAGCGGTACCGCATTGGACGATAACCGTCTGAAC
TACGCGGTGCAGAGCGGTCACGATCGTTACGCTGGGCAAACCACCTCGGCTAACGTGGGTTATCAGGGCAGCATGGGTAC
GGTGAATGCCGGTTACAGCTACAGCAATGATTACCAGCAGTCTTCGTTGGGCGTATCGGGCGGTATCGTGGCGCACTCCG
GTGGTGTGACGTTGACTCAGCCATTACAGAACACTTTCGTGCTGGTTGAAGCCAAAGACGCCAAAGGCGTTCGTCTGGAA
AACCAACCGGGTGTGGCTATTGACCGCTTTGGTTACGCGGTGATGACTTCTGCGTCGCCATACCGTCACAACCGTGTGGC
GCTGCGTACCGAAGATATCGGCAACGGCCTGGATATCCCGATGGCAGCTCGTGATGTGGTACCGACATACGGCGCAATTA
CCCGCGTGAAGTTTGAAACGCATACCGGTCAAAGCCTGCTGGTACACAGTAAAATGTTGGACGGCGGCGTACCGCCAATC
GGCGCCAACGTGTTCAGCGCTGACGGCAAGAACAACGGTACCGTAGGTACCAATGGGGATATTTATATCTCCGGGGCATC
CGCAGGGGATCGCCTGTTGGTTAAATGGGGCAGCGATGCCGGCGACAGCTGTTCATTAGTGGTGCCGGAACTGAAATCGG
CGACCGAACAGCTGATGGGCTATCAGGAACTTTCGCTGACCTGCGGAAAACCGTAA

Upstream 100 bases:

>100_bases
GGCAGTATGTCGTTTACCTATATCAACGATTACGGCGGCCACACCGAGATTAAGAACGTTGCATTAAATTGATTTAAGCC
CTTCAAGGAATGAACAAGAA

Downstream 100 bases:

>100_bases
AAGGAATGGATATGTCTTCTTTGTTGTTAAAACACAAAAAACTCGGGCTGGCGGCAGGGCTGCTGGTCACACTGGGGACG
TTCTCGCAGAGCAGCTTTGC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 871; Mature: 870

Protein sequence:

>871_residues
MAHKRITTLTPKRLVRLINGVIYFSAVPFSFSHMAMAEEQFNTSFIHGDDNIAQVAALSSGDDILPGKYPFDIYLNGQRI
DHREIEFKKDTKDTPVMPCLTAQDYQDYGVKLPGDMKTEGAAQCYALSQQISGAKLSYDAAIQRMDLEVPQVFLEPRPQG
AISPKVYDRGINAGFVNYNFSGNHNNYSNNANDKTSDYYFLSLNNGLNIGNWRLRNNSTLNQQSGAGTHWNTVSSWAETD
IVSLRSRMVIGQTNTNNNVFDSIQFRGVQISSANDMLPESQRGYAPVVRGVASTNARVEIRQNGYTIYSTNVPPGPFALT
DIFPSTLSGNLNVTVIEANGSRTTFVVPFSSVPNMLREGIWDYQMTAGKYHDGTTKYQPKFVQGTLSHGMGYDITPYGGV
LVAENYRSAVLGMGKNMGVWGAVSFDMSYSDTNLVNGDDKQGESFRFLYSKSLNDWGTEFQIAGYRYSTSGYYDFSDAVA
ERDRYENGYYRNDYYDENDRNQGVPDWAESRRRTYYTSKFNNKRQRVELSINQRIAGNSTLYTNVSNQSYWGGSGQDRTV
QTGFNSSYKNISYGVFYQDSRSNYGYKDRSINMTVSIPFSFFSRDSSDMTASFNAGHSKQSGNTYSAGLSGTALDDNRLN
YAVQSGHDRYAGQTTSANVGYQGSMGTVNAGYSYSNDYQQSSLGVSGGIVAHSGGVTLTQPLQNTFVLVEAKDAKGVRLE
NQPGVAIDRFGYAVMTSASPYRHNRVALRTEDIGNGLDIPMAARDVVPTYGAITRVKFETHTGQSLLVHSKMLDGGVPPI
GANVFSADGKNNGTVGTNGDIYISGASAGDRLLVKWGSDAGDSCSLVVPELKSATEQLMGYQELSLTCGKP

Sequences:

>Translated_871_residues
MAHKRITTLTPKRLVRLINGVIYFSAVPFSFSHMAMAEEQFNTSFIHGDDNIAQVAALSSGDDILPGKYPFDIYLNGQRI
DHREIEFKKDTKDTPVMPCLTAQDYQDYGVKLPGDMKTEGAAQCYALSQQISGAKLSYDAAIQRMDLEVPQVFLEPRPQG
AISPKVYDRGINAGFVNYNFSGNHNNYSNNANDKTSDYYFLSLNNGLNIGNWRLRNNSTLNQQSGAGTHWNTVSSWAETD
IVSLRSRMVIGQTNTNNNVFDSIQFRGVQISSANDMLPESQRGYAPVVRGVASTNARVEIRQNGYTIYSTNVPPGPFALT
DIFPSTLSGNLNVTVIEANGSRTTFVVPFSSVPNMLREGIWDYQMTAGKYHDGTTKYQPKFVQGTLSHGMGYDITPYGGV
LVAENYRSAVLGMGKNMGVWGAVSFDMSYSDTNLVNGDDKQGESFRFLYSKSLNDWGTEFQIAGYRYSTSGYYDFSDAVA
ERDRYENGYYRNDYYDENDRNQGVPDWAESRRRTYYTSKFNNKRQRVELSINQRIAGNSTLYTNVSNQSYWGGSGQDRTV
QTGFNSSYKNISYGVFYQDSRSNYGYKDRSINMTVSIPFSFFSRDSSDMTASFNAGHSKQSGNTYSAGLSGTALDDNRLN
YAVQSGHDRYAGQTTSANVGYQGSMGTVNAGYSYSNDYQQSSLGVSGGIVAHSGGVTLTQPLQNTFVLVEAKDAKGVRLE
NQPGVAIDRFGYAVMTSASPYRHNRVALRTEDIGNGLDIPMAARDVVPTYGAITRVKFETHTGQSLLVHSKMLDGGVPPI
GANVFSADGKNNGTVGTNGDIYISGASAGDRLLVKWGSDAGDSCSLVVPELKSATEQLMGYQELSLTCGKP
>Mature_870_residues
AHKRITTLTPKRLVRLINGVIYFSAVPFSFSHMAMAEEQFNTSFIHGDDNIAQVAALSSGDDILPGKYPFDIYLNGQRID
HREIEFKKDTKDTPVMPCLTAQDYQDYGVKLPGDMKTEGAAQCYALSQQISGAKLSYDAAIQRMDLEVPQVFLEPRPQGA
ISPKVYDRGINAGFVNYNFSGNHNNYSNNANDKTSDYYFLSLNNGLNIGNWRLRNNSTLNQQSGAGTHWNTVSSWAETDI
VSLRSRMVIGQTNTNNNVFDSIQFRGVQISSANDMLPESQRGYAPVVRGVASTNARVEIRQNGYTIYSTNVPPGPFALTD
IFPSTLSGNLNVTVIEANGSRTTFVVPFSSVPNMLREGIWDYQMTAGKYHDGTTKYQPKFVQGTLSHGMGYDITPYGGVL
VAENYRSAVLGMGKNMGVWGAVSFDMSYSDTNLVNGDDKQGESFRFLYSKSLNDWGTEFQIAGYRYSTSGYYDFSDAVAE
RDRYENGYYRNDYYDENDRNQGVPDWAESRRRTYYTSKFNNKRQRVELSINQRIAGNSTLYTNVSNQSYWGGSGQDRTVQ
TGFNSSYKNISYGVFYQDSRSNYGYKDRSINMTVSIPFSFFSRDSSDMTASFNAGHSKQSGNTYSAGLSGTALDDNRLNY
AVQSGHDRYAGQTTSANVGYQGSMGTVNAGYSYSNDYQQSSLGVSGGIVAHSGGVTLTQPLQNTFVLVEAKDAKGVRLEN
QPGVAIDRFGYAVMTSASPYRHNRVALRTEDIGNGLDIPMAARDVVPTYGAITRVKFETHTGQSLLVHSKMLDGGVPPIG
ANVFSADGKNNGTVGTNGDIYISGASAGDRLLVKWGSDAGDSCSLVVPELKSATEQLMGYQELSLTCGKP

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=875, Percent_Identity=38.7428571428571, Blast_Score=588, Evalue=1e-169,
Organism=Escherichia coli, GI1786744, Length=889, Percent_Identity=35.3205849268841, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1787172, Length=869, Percent_Identity=35.4430379746835, Blast_Score=511, Evalue=1e-146,
Organism=Escherichia coli, GI1789533, Length=879, Percent_Identity=32.7645051194539, Blast_Score=445, Evalue=1e-126,
Organism=Escherichia coli, GI1788427, Length=816, Percent_Identity=31.0049019607843, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI1786332, Length=848, Percent_Identity=29.8349056603774, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI87081778, Length=824, Percent_Identity=24.6359223300971, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1789610, Length=816, Percent_Identity=25.2450980392157, Blast_Score=147, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95814; Mature: 95683

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHKRITTLTPKRLVRLINGVIYFSAVPFSFSHMAMAEEQFNTSFIHGDDNIAQVAALSS
CCCCEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCEEEEEEECC
GDDILPGKYPFDIYLNGQRIDHREIEFKKDTKDTPVMPCLTAQDYQDYGVKLPGDMKTEG
CCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCHHHCCEECCCCCCCCC
AAQCYALSQQISGAKLSYDAAIQRMDLEVPQVFLEPRPQGAISPKVYDRGINAGFVNYNF
CHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEE
SGNHNNYSNNANDKTSDYYFLSLNNGLNIGNWRLRNNSTLNQQSGAGTHWNTVSSWAETD
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
IVSLRSRMVIGQTNTNNNVFDSIQFRGVQISSANDMLPESQRGYAPVVRGVASTNARVEI
HHHHHCEEEEEECCCCCCEEECEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
RQNGYTIYSTNVPPGPFALTDIFPSTLSGNLNVTVIEANGSRTTFVVPFSSVPNMLREGI
EECCEEEEECCCCCCCEEEECCCHHHCCCCEEEEEEEECCCEEEEEEECHHHHHHHHHCC
WDYQMTAGKYHDGTTKYQPKFVQGTLSHGMGYDITPYGGVLVAENYRSAVLGMGKNMGVW
CCEEECCCEECCCCCCCCCCCEEEHHHCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCEE
GAVSFDMSYSDTNLVNGDDKQGESFRFLYSKSLNDWGTEFQIAGYRYSTSGYYDFSDAVA
EEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHH
ERDRYENGYYRNDYYDENDRNQGVPDWAESRRRTYYTSKFNNKRQRVELSINQRIAGNST
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEEECCEECCCCE
LYTNVSNQSYWGGSGQDRTVQTGFNSSYKNISYGVFYQDSRSNYGYKDRSINMTVSIPFS
EEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECHH
FFSRDSSDMTASFNAGHSKQSGNTYSAGLSGTALDDNRLNYAVQSGHDRYAGQTTSANVG
HHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCC
YQGSMGTVNAGYSYSNDYQQSSLGVSGGIVAHSGGVTLTQPLQNTFVLVEAKDAKGVRLE
CCCCCCCEECCCCCCCCCCHHHCCCCCCEEEECCCEEEECCCCCEEEEEEECCCCCEEEC
NQPGVAIDRFGYAVMTSASPYRHNRVALRTEDIGNGLDIPMAARDVVPTYGAITRVKFET
CCCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEEEEC
HTGQSLLVHSKMLDGGVPPIGANVFSADGKNNGTVGTNGDIYISGASAGDRLLVKWGSDA
CCCCEEEEEEHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC
GDSCSLVVPELKSATEQLMGYQELSLTCGKP
CCCCEEECHHHHHHHHHHCCCEEEEEECCCC
>Mature Secondary Structure 
AHKRITTLTPKRLVRLINGVIYFSAVPFSFSHMAMAEEQFNTSFIHGDDNIAQVAALSS
CCCEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCEEEEEEECC
GDDILPGKYPFDIYLNGQRIDHREIEFKKDTKDTPVMPCLTAQDYQDYGVKLPGDMKTEG
CCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCHHHCCEECCCCCCCCC
AAQCYALSQQISGAKLSYDAAIQRMDLEVPQVFLEPRPQGAISPKVYDRGINAGFVNYNF
CHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEE
SGNHNNYSNNANDKTSDYYFLSLNNGLNIGNWRLRNNSTLNQQSGAGTHWNTVSSWAETD
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
IVSLRSRMVIGQTNTNNNVFDSIQFRGVQISSANDMLPESQRGYAPVVRGVASTNARVEI
HHHHHCEEEEEECCCCCCEEECEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
RQNGYTIYSTNVPPGPFALTDIFPSTLSGNLNVTVIEANGSRTTFVVPFSSVPNMLREGI
EECCEEEEECCCCCCCEEEECCCHHHCCCCEEEEEEEECCCEEEEEEECHHHHHHHHHCC
WDYQMTAGKYHDGTTKYQPKFVQGTLSHGMGYDITPYGGVLVAENYRSAVLGMGKNMGVW
CCEEECCCEECCCCCCCCCCCEEEHHHCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCEE
GAVSFDMSYSDTNLVNGDDKQGESFRFLYSKSLNDWGTEFQIAGYRYSTSGYYDFSDAVA
EEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHH
ERDRYENGYYRNDYYDENDRNQGVPDWAESRRRTYYTSKFNNKRQRVELSINQRIAGNST
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEEECCEECCCCE
LYTNVSNQSYWGGSGQDRTVQTGFNSSYKNISYGVFYQDSRSNYGYKDRSINMTVSIPFS
EEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECHH
FFSRDSSDMTASFNAGHSKQSGNTYSAGLSGTALDDNRLNYAVQSGHDRYAGQTTSANVG
HHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCC
YQGSMGTVNAGYSYSNDYQQSSLGVSGGIVAHSGGVTLTQPLQNTFVLVEAKDAKGVRLE
CCCCCCCEECCCCCCCCCCHHHCCCCCCEEEECCCEEEECCCCCEEEEEEECCCCCEEEC
NQPGVAIDRFGYAVMTSASPYRHNRVALRTEDIGNGLDIPMAARDVVPTYGAITRVKFET
CCCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEEEEC
HTGQSLLVHSKMLDGGVPPIGANVFSADGKNNGTVGTNGDIYISGASAGDRLLVKWGSDA
CCCCEEEEEEHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC
GDSCSLVVPELKSATEQLMGYQELSLTCGKP
CCCCEEECHHHHHHHHHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]