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The map label for this gene is ygbI [H]

Identifier: 157369736

GI number: 157369736

Start: 1627676

End: 1628440

Strand: Direct

Name: ygbI [H]

Synonym: Spro_1493

Alternate gene names: 157369736

Gene position: 1627676-1628440 (Clockwise)

Preceding gene: 157369729

Following gene: 157369741

Centisome position: 29.87

GC content: 58.04

Gene sequence:

>765_bases
GTGATACCTGTAGAACGCCATCAACAAATTTTAGCGCTGGTATCAGAACGCGGGGTGGTCAGCATTGCTGAGTTGACCGA
ACGGCTGGGGGTGTCGCACATGACCATTCGCCGCGATCTGCAAAAGCTCGAGGAGCAGGGCGCGGTACTGGCGGTGTCGG
GTGGCGTGCAGTCGGCAGAACGGGTGGCGATTGAGCCTTCGCATCAGGACAAGGAAGGGATGTACAGCCAGCAGAAAGCG
GCCATCGGTCAGTTGGCTGCCCGGCAGATCCCCGCTGACAGCTGTATCTATCTGGATGCGGGTACCACGACGCTGGCGCT
GGCCAGGCACATTAGCGATCGCGATGACCTGACGGTGGTCACCAATGATTTCGTGATTGCGGGTTACCTGATTGAACACA
GCCAGTGCAAAATCATTCACACCGGCGGCACCGTCTGCCGTGAGAATCGCTCCTGCGTGGGGGAAGCGGCAGCGCAGGCA
TTGCGCGGGCTGTTTATCGATCTGGCGTTTATTTCCGCTTCGTCATGGGGCATGCGTGGGCTGTCGACGCCGAACGAAGA
CAAGGTGATGGTGAAGAAAGCCATTGTGGATGCCAGCCGCCGCTGCATTCTACTCAGCGATACCTCTAAATACGGTAAAG
TTGCCACTTATCTGGCACTGCCGATAACGGCATTTGACGCGATTATTACCGATAACAACCTGCCAGCCGCCGCGCGCGAG
GCGATCCAGCAGGCGGATATTACGCTGATGACGACCGGGGAGTGA

Upstream 100 bases:

>100_bases
ATAACATGAGCGACTTCACGGCCTGAAAACAGCAGGCTTTCACCGAACGAAAATTGACGTAAAATCACAATTATTATCAC
TGCGGTAAAGAGAGGGAACC

Downstream 100 bases:

>100_bases
TTGGCTAAAACAGAAAACCCCCAAATGGGGGTTATGACGTTTCGTTGGAACGGTAGCGGCTGATGACCCGCCCTGGCGTA
CCGAGGCAACCTCGTTCACG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIPVERHQQILALVSERGVVSIAELTERLGVSHMTIRRDLQKLEEQGAVLAVSGGVQSAERVAIEPSHQDKEGMYSQQKA
AIGQLAARQIPADSCIYLDAGTTTLALARHISDRDDLTVVTNDFVIAGYLIEHSQCKIIHTGGTVCRENRSCVGEAAAQA
LRGLFIDLAFISASSWGMRGLSTPNEDKVMVKKAIVDASRRCILLSDTSKYGKVATYLALPITAFDAIITDNNLPAAARE
AIQQADITLMTTGE

Sequences:

>Translated_254_residues
MIPVERHQQILALVSERGVVSIAELTERLGVSHMTIRRDLQKLEEQGAVLAVSGGVQSAERVAIEPSHQDKEGMYSQQKA
AIGQLAARQIPADSCIYLDAGTTTLALARHISDRDDLTVVTNDFVIAGYLIEHSQCKIIHTGGTVCRENRSCVGEAAAQA
LRGLFIDLAFISASSWGMRGLSTPNEDKVMVKKAIVDASRRCILLSDTSKYGKVATYLALPITAFDAIITDNNLPAAARE
AIQQADITLMTTGE
>Mature_254_residues
MIPVERHQQILALVSERGVVSIAELTERLGVSHMTIRRDLQKLEEQGAVLAVSGGVQSAERVAIEPSHQDKEGMYSQQKA
AIGQLAARQIPADSCIYLDAGTTTLALARHISDRDDLTVVTNDFVIAGYLIEHSQCKIIHTGGTVCRENRSCVGEAAAQA
LRGLFIDLAFISASSWGMRGLSTPNEDKVMVKKAIVDASRRCILLSDTSKYGKVATYLALPITAFDAIITDNNLPAAARE
AIQQADITLMTTGE

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=66.4, Blast_Score=339, Evalue=9e-95,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=30.0395256916996, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=31.6, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1789059, Length=256, Percent_Identity=30.46875, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=29.6, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787540, Length=246, Percent_Identity=26.4227642276423, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790753, Length=257, Percent_Identity=28.7937743190661, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788069, Length=239, Percent_Identity=26.7782426778243, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790635, Length=251, Percent_Identity=25.0996015936255, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787063, Length=228, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789170, Length=212, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27405; Mature: 27405

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPVERHQQILALVSERGVVSIAELTERLGVSHMTIRRDLQKLEEQGAVLAVSGGVQSAE
CCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
RVAIEPSHQDKEGMYSQQKAAIGQLAARQIPADSCIYLDAGTTTLALARHISDRDDLTVV
EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEE
TNDFVIAGYLIEHSQCKIIHTGGTVCRENRSCVGEAAAQALRGLFIDLAFISASSWGMRG
ECCEEEEEEEEECCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LSTPNEDKVMVKKAIVDASRRCILLSDTSKYGKVATYLALPITAFDAIITDNNLPAAARE
CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHH
AIQQADITLMTTGE
HHHHCCEEEEECCC
>Mature Secondary Structure
MIPVERHQQILALVSERGVVSIAELTERLGVSHMTIRRDLQKLEEQGAVLAVSGGVQSAE
CCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
RVAIEPSHQDKEGMYSQQKAAIGQLAARQIPADSCIYLDAGTTTLALARHISDRDDLTVV
EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEE
TNDFVIAGYLIEHSQCKIIHTGGTVCRENRSCVGEAAAQALRGLFIDLAFISASSWGMRG
ECCEEEEEEEEECCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LSTPNEDKVMVKKAIVDASRRCILLSDTSKYGKVATYLALPITAFDAIITDNNLPAAARE
CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHH
AIQQADITLMTTGE
HHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]