Click here to switch to the map view.

The map label for this gene is virS [H]

Identifier: 157369419

GI number: 157369419

Start: 1293321

End: 1294358

Strand: Reverse

Name: virS [H]

Synonym: Spro_1176

Alternate gene names: 157369419

Gene position: 1294358-1293321 (Counterclockwise)

Preceding gene: 157369421

Following gene: 157369411

Centisome position: 23.75

GC content: 45.57

Gene sequence:

>1038_bases
ATGTTATCGGACATGGCGACAATGATAAACTCTACTGGTTTTAAAGGTTATTCCGGGCTCATGAATGAGCTTGGCGTTGA
TCCATTGCCATTGTTACGTAAACACGGACTGCCTGTAGATTTAGGAGAGGTGGATGATGCTGTTGTACCGATAATACCGG
TAATGCAGCTAATGGAAGAAAGTGCCTTGGTAACGCAGCATCTCGATTTTGGTCTAACATTGGCGGCGCGACAAGGGATT
GATATTATAGGGCCTCTTGCTATGGCCATCCAACATTCGAAAAATGTGCGTGAAGCGATGGACACAGCCTCGCGGTTTCT
GTATGTACACAGCCCCGCAGTACAGCTTTCGATTATTGATCCCAGTCCCTTAATTCCAGGCGCTGTTGAAATTCGCCTCG
AGCAAGCAGTACCTAATGCCCCTTTGTTTCGGCAGACTATCGAGCACTGTTTAAGCCGCCTTCATTATTTGCTAAAATCT
TTTGCAAAAGATAATTATCACTTGCTAGCAATAACATTTCCTTACGGAGATGTTTCTAATTTTAGTGACTACCGACGGTT
TTTCGGACCCGCTCAAGTTTGTTTGGAACACGAATTTAGCGGATTACACCTATCGCCGAAAACGCTGAACAGCAAACTAG
ATAATGTTAGTTCATTGCTAAAAAACATCGCTCTGGACTACCTGCAGAGGCATTATGGAAATCCTGAATTATCAATGACC
AGTCGTGTACGTCGCGCATTGCACTGCACTATAGGGGCAATGGGAGGAAGTAAATCATCAATTGCTGAATTATTGTTTTT
ACACCCTCGTACGATGCAGCGCAAATTGGCTGAAGAATCAGCGACGTTTGAAGGGATCCGTGATGGAGTACGACAGGAAA
TCGCATTACGCTTCCTCACACAAACACGTATCCCGTTGGCGCAATTGGCGGCCATTCTGGGTTTTTCCGATCAATCTGTT
CTTACTACTTCGTCTCGGCGATGGTTCGGCATGTCCCCCTCAAAAGTCCGTGCTGCGAAGTCATCACTTCGACTGTAA

Upstream 100 bases:

>100_bases
CTTGTAGCTTCCTGTAGTGATTGATATTTGTACTCTGTGAGCATGCCGTATCAAGGTCATTAAATGTGTATTTCTCTTGA
TTTCACAGGGCAATTTTTTT

Downstream 100 bases:

>100_bases
GCACAGTCATAGCGTTCTCTTCGGAGAAGTGAACTTTATTCTTATCAACGACAGCCGTAAATAACCTGATCCCCTTTACC
ATCTATCTTTTTTATTCATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLSDMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEESALVTQHLDFGLTLAARQGI
DIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIIDPSPLIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKS
FAKDNYHLLAITFPYGDVSNFSDYRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMT
SRVRRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLTQTRIPLAQLAAILGFSDQSV
LTTSSRRWFGMSPSKVRAAKSSLRL

Sequences:

>Translated_345_residues
MLSDMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEESALVTQHLDFGLTLAARQGI
DIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIIDPSPLIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKS
FAKDNYHLLAITFPYGDVSNFSDYRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMT
SRVRRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLTQTRIPLAQLAAILGFSDQSV
LTTSSRRWFGMSPSKVRAAKSSLRL
>Mature_345_residues
MLSDMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEESALVTQHLDFGLTLAARQGI
DIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIIDPSPLIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKS
FAKDNYHLLAITFPYGDVSNFSDYRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMT
SRVRRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLTQTRIPLAQLAAILGFSDQSV
LTTSSRRWFGMSPSKVRAAKSSLRL

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38236; Mature: 38236

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSDMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEE
CCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SALVTQHLDFGLTLAARQGIDIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIID
HHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEC
PSPLIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKSFAKDNYHLLAITFPYGDVSN
CCCCCCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
FSDYRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMT
HHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
SRVRRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLT
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTRIPLAQLAAILGFSDQSVLTTSSRRWFGMSPSKVRAAKSSLRL
HCCCCHHHHHHHHCCCCCCEEEECCCCEECCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLSDMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEE
CCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SALVTQHLDFGLTLAARQGIDIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIID
HHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEC
PSPLIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKSFAKDNYHLLAITFPYGDVSN
CCCCCCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
FSDYRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMT
HHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
SRVRRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLT
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTRIPLAQLAAILGFSDQSVLTTSSRRWFGMSPSKVRAAKSSLRL
HCCCCHHHHHHHHCCCCCCEEEECCCCEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]