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The map label for this gene is raiA [H]

Identifier: 157369127

GI number: 157369127

Start: 976933

End: 977274

Strand: Reverse

Name: raiA [H]

Synonym: Spro_0882

Alternate gene names: 157369127

Gene position: 977274-976933 (Counterclockwise)

Preceding gene: 157369128

Following gene: 157369126

Centisome position: 17.94

GC content: 51.75

Gene sequence:

>342_bases
ATGACATTGAACATTACCAGCAAACAAATGGATATCACTCCCGCAATCCGCAGTCACGTCGAAGACCGTCTCACCAAACT
GGAAAAATGGCAGGCCCAACTGATTAACCCACATATCGTCTTATCCAAAGAACCGAAAGGGTTTGTTGCCGACGCCACCA
TTACTACCCCTAACGGCCCGCTGGTCGCCAGCGCTAAACATGAAGACATGTACACCGCCGTTAACGATCTGATCGCCAAG
CTGGAACGCCAGTTGAATAAGGTGCAGCACAAAGGCGAAGCACGCCGTGCCGCGACCAGCGTGAAGGACATCATTCCGGA
AGTCGAACCGGAACAGGAATAA

Upstream 100 bases:

>100_bases
TGCAAAAAGTGACAAAAATACGTGATTTTCATCACGCATTTAAGCAAAAAGCGGGGTATGCTGGATCCATCCAAGACGGA
AAGACAGAGAGGTAAGTTAT

Downstream 100 bases:

>100_bases
CCGTTTAGCGGCTGTTTCACATCAAACGCGCCTGAGGGCGCGTTTTTTGTCTGGTTTTTTTATTGACGAGATAAAGGCCT
GCGGTTACTTTAAAACCTGT

Product: sigma 54 modulation protein/30S ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MTLNITSKQMDITPAIRSHVEDRLTKLEKWQAQLINPHIVLSKEPKGFVADATITTPNGPLVASAKHEDMYTAVNDLIAK
LERQLNKVQHKGEARRAATSVKDIIPEVEPEQE

Sequences:

>Translated_113_residues
MTLNITSKQMDITPAIRSHVEDRLTKLEKWQAQLINPHIVLSKEPKGFVADATITTPNGPLVASAKHEDMYTAVNDLIAK
LERQLNKVQHKGEARRAATSVKDIIPEVEPEQE
>Mature_112_residues
TLNITSKQMDITPAIRSHVEDRLTKLEKWQAQLINPHIVLSKEPKGFVADATITTPNGPLVASAKHEDMYTAVNDLIAKL
ERQLNKVQHKGEARRAATSVKDIIPEVEPEQE

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=113, Percent_Identity=80.5309734513274, Blast_Score=188, Evalue=6e-50,
Organism=Escherichia coli, GI1789595, Length=87, Percent_Identity=40.2298850574713, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12649; Mature: 12517

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNITSKQMDITPAIRSHVEDRLTKLEKWQAQLINPHIVLSKEPKGFVADATITTPNGP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCEEECCCCC
LVASAKHEDMYTAVNDLIAKLERQLNKVQHKGEARRAATSVKDIIPEVEPEQE
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLNITSKQMDITPAIRSHVEDRLTKLEKWQAQLINPHIVLSKEPKGFVADATITTPNGP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCEEECCCCC
LVASAKHEDMYTAVNDLIAKLERQLNKVQHKGEARRAATSVKDIIPEVEPEQE
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]