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The map label for this gene is exbD [H]

Identifier: 157368845

GI number: 157368845

Start: 665181

End: 665588

Strand: Direct

Name: exbD [H]

Synonym: Spro_0600

Alternate gene names: 157368845

Gene position: 665181-665588 (Clockwise)

Preceding gene: 157368844

Following gene: 157368846

Centisome position: 12.21

GC content: 55.64

Gene sequence:

>408_bases
ATGCGTAACTGGAACGAGCCGAAGAAGAACAAAGCGCACATCGAACTGATCCCGATGATCGACGTGATGATGTTTTTGCT
GGTGTTTTTTGTGTTGATTAGCCTGAACGTGATCCCGGCCCTCGGGCTGAAAACTCAGTTGCCGTCCGCCGGCAGTGCGC
AGCAGTTGAAACCGCAGAAGAAGGCGATCATTACGCTGGGTGCCGAAGATCAACTGCAGCTCGACGGCCAGCCGTTGGCG
CTGAGTGCGCTGGTCAGCACGCTAAAGCAACAGCAACAGGAAAACCAGACCACCACCATTATCGTCAACAGCGACAAGGG
CGTCGCGGTAGAGCGGCTGGTGGCGGTGATGGATAACCTGCGTCAGGGCGGTTTTTACTCTGTCTCTATCGCCACACGGA
AGCTGTGA

Upstream 100 bases:

>100_bases
TCTCAAAATGTGTTCACTGTGAGAATAAGATCACACAAGCGTAACAAAAGGTAAACATAGGCTCTCTATATTGGCTGCTT
TGCTTTTGGGAGGGAGTGCC

Downstream 100 bases:

>100_bases
CATGTATCTGCTCTATCGTTCACGTCACCTTTTCAGTTGGTTACCGGCGCTGATCGTCGTCGGCTGCGTACTGTTTGCCA
GCCAGCAGGCGGCGCTGAAA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRNWNEPKKNKAHIELIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSAGSAQQLKPQKKAIITLGAEDQLQLDGQPLA
LSALVSTLKQQQQENQTTTIIVNSDKGVAVERLVAVMDNLRQGGFYSVSIATRKL

Sequences:

>Translated_135_residues
MRNWNEPKKNKAHIELIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSAGSAQQLKPQKKAIITLGAEDQLQLDGQPLA
LSALVSTLKQQQQENQTTTIIVNSDKGVAVERLVAVMDNLRQGGFYSVSIATRKL
>Mature_135_residues
MRNWNEPKKNKAHIELIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSAGSAQQLKPQKKAIITLGAEDQLQLDGQPLA
LSALVSTLKQQQQENQTTTIIVNSDKGVAVERLVAVMDNLRQGGFYSVSIATRKL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=129, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14882; Mature: 14882

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNWNEPKKNKAHIELIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSAGSAQQLKPQK
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
KAIITLGAEDQLQLDGQPLALSALVSTLKQQQQENQTTTIIVNSDKGVAVERLVAVMDNL
CEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
RQGGFYSVSIATRKL
CCCCEEEEEEEEECC
>Mature Secondary Structure
MRNWNEPKKNKAHIELIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSAGSAQQLKPQK
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
KAIITLGAEDQLQLDGQPLALSALVSTLKQQQQENQTTTIIVNSDKGVAVERLVAVMDNL
CEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
RQGGFYSVSIATRKL
CCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]