Definition Shewanella sediminis HAW-EB3, complete genome.
Accession NC_009831
Length 5,517,674

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Identifier: 157376469

GI number:

Start: 4055530

End: 4058592

Strand: Reverse

Name: Not Available

Synonym: Ssed_3337

Alternate gene names: NA

Gene position: NA

Preceding gene: 157376472

Following gene: 157376468

Centisome position: NA

GC content: NA

Gene sequence:

>3063_bases
ATGGATTCTGATGTCATTTTTTCTTTAGTGCAGAATGCGGCGCTGCTTCTGGCTATGGTATTTGTGTACGATGCCGTTCC
CAGAAAGCAGAGACATGAGTACTTTTTTCTTTGGCGGATTTCCGTCGGAACCGTCATAGGTGGGATCACCGTGACGACCA
TGATGACTCACTGGGAATATCAGCCTGGGGTCTTTTTCGATGCGCGTTCCATTATCCTGGGGATTTCCGGGCTCTTCTTC
GGCGGTTTACCCACTTTTGTTGCCATGGTTATCGCATCCGTTTATCGGTTCTTAGAGGGAGGAAGTGGCTGGTGGGCCGG
AATCGGCATCATTTTTTCCTCTGGCCTCCTGGGCAGCTATTGGCGATATTATCGAAAGAGTTTCATTGCTGATCTCTCCT
TTAAAGAACTCTATGCTTTTGGTTTTATCCTACAAGTCATTACCCTTCTATGGATGTTTGTACTGCCCTTTGAGATGGCG
ATAAGCATCTTATCTCGAATTAGTTTTCCGGCATTAATCGTTTACCCCATCGCGTTTGTCTTGCTTGGCCTGTTGCTCTC
CAGGCGATTGGAGATTGAACGAGACGCCAAGATCCAGCTTCAGGATGACTTCATTTTTCGCTCCCAATTTAATGTTGGCA
ATATTGGTATTGCGATCTCTTCGGTGGATCAGCATTGGATAAAGGTGAATCCTCGCATGTGTCAGATGTTGCAATATACC
GAGGAGGAGTTGCTGTTAAAAACCTGGGCCGAAATGACCTATTTCGATGATCTGCAAACGGATCTTAACCTGTTTAACCG
CATGTTAGATGGTGAGTTTGATGAGTATGAGATGGATAAACGTTATGTGGCTAAAGATGGCTCGATTGTCTATACCCACT
TAACGGTAGCGTGTCAGAGAGTGAATAACCAAGTTCAGTTGGTGATAGCGGGCTTATTGGATATCACCTCTCAGAAACAA
GCAGAGTCAGCCATGTCTAAAAGTCAGGAGCAGTTAGCACTGGTATTAGACAGTAGTGAACTTGGGCTATGGGATTGGGA
TCTTAAATCGGATAAAGTCGACCGTAATGACTATTGTGCCAAGCTTTTGGGCTCTGGCGTTGAAGAACTTAATGATGATG
GACGATTATGGATTAATGCGATTCACCCCCAGGACAGGCTGGAGGTATTGCATGCGATGGATAAACACCTCAAGGGAGAG
AATCCTCAATACACAGTCGAATATCGATTAAATACATTCAGCGGTGAAACCCGCTGGATACTCGACCGTGGCAAGGTGGC
GAGTAAAGACGCTAATGGTGCTCCCCTTCGCGTGTGCGGTACGAATACGGATATCACCGACAGGAAGCGGGGAGAGGAGT
CATTACAACTCGCGGCATCTGTGTATAACAACTCGAGTGAGGCGATGAGTGTTCAGGATAGCTTGGGTAATATCATCACC
ATCAACTCTGCCTTTACCGATATAACCGGCTATTTGGAGGGCGAGGTCCTCAGTAAACATATTCGAATACTGGAATGTGA
TAGAACCAGTAAAAATCAATATGAACAGATGAATATGCAGATAACCCAAACCGGTCGGTGGCAGGGGGAAGTGTGGTTGA
AGCATAAGAGTGGAACCGAATTTATTGTCTGGCTGACTATCAATACCATTTTAGATAACAAGGGGGAGGTCTATCGCCGA
GTCGCACTGTTTTCCGATATTACCGAGAAGAAACAGGCCGAACATATTATCTGGAAGCAGGCGAACTATGATCCTCTAAC
CGGTTTACCTAATCGAAGAATGCTGTTGGAATATCTGGGCACCGAATTACTTAAGTCAGACCGAAATAAAAAACATTTTG
CACTGATGTTTCTCGATTTAGATTATTTCAAAGAGGTCAATGATAGCTTAGGTCATGATATTGGCGATCTGCTCCTTGTG
GAAACGGCTAAACGCCTCAAGGGGTGCATTCGTGAATCAGATGTGGTGGCAAGGTTAGGAGGTGATGAGTTTACCGTCGT
ACTTTCGGCGATACAAGATCACAAAGGGGTTGAAAGAGTTGCCGAAAACATTCTCTCCAGGCTGGCAGAGCCTTTTAACT
TAGATAATGAAAGTGCTTATATCAGTGCGAGTATCGGGATCACCCTCTATCCTGACGATGCCTCAAGCATTGATGGTCTG
CTCAAGCATGCGGATCAAGCCATGTACGCCGCAAAAGAGCAGGGAAGAAATCGATACCATTATTTTACCCCTTCCATGCA
GGAGTATGCCAAATATCGGATGCTGCTTATCCGAGACTTACGCAAGGCCATAATACGCAAAGAGTTTGAAATTTATTATC
AACCGATCATTGAGTTAACCGATTCCAAAGTGTTTAAAGCCGAAGCGCTGATCCGTTGGCATCACCCCGTCAGAGGGGTC
GTATCACCCGGTGAGTTTATTCCCGTAGCCGAAGAGACGGGCTTAATCATCGAAATCGGCAACTGGGTATTTGAGCAAGC
TGCGAAACAGAGTGCAATGTGGCGTGAACGTTTTGGCGTCGCGATACAGATCAGCATTAATAAATCTCCGATCCAATTCA
GGGATGAGGGAGAGAGCTTCGTCGATTGGATTGAGCAGTTAAAAAAGCTTAACCTCGAGAGCAACGGGATCTGCGTGGAG
ATAACCGAAGGTCTGTTACTGGATGCGAGCATGGGCGTCTCAGAAAAGCTGCTCGCATACCGGGATGCTGGGGTTCAGGT
TTCTCTCGATGATTTTGGTACGGGTTACTCGTCACTGGCCTATCTAAAAAAATTCGATATCGATTATCTTAAAATTGATC
AATCCTTCACCCGTAACTTAGAGACTGACTCTAATGACGTTACCCTTTGCGAAGCGATTATCGTGATGGCTCACAAGCTT
GGAATGAAAGTTATTGCCGAAGGCGTCGAAACCGAGTACCAGAAAAAAATCTTGTTTGAAGCGGGTTGTGATTATGGTCA
AGGCTACCTTTTTTCAAAACCGATTCCGGTCGCAGATTTTGAAGCGAAATATCTTATCGGTTTAACAGAGTTACCCAATG
AAAAGGGTTCGCCTAGCCAGTGA

Upstream 100 bases:

>100_bases
AGTAAACTTCAGACTTAATAGTTACTTGTCTCATTTCTATAACGATTCTGCTACAATCAAAGTTTGCAATTCCCTATTTT
TAAGAGATTCGTTCCGTCAT

Downstream 100 bases:

>100_bases
TGACTGATTTTGATAGACTCCGCGCTCATTTATTATCCCCTGTGAGTTTTTCATGAAATTTGACGCACTCGAATTGAACC
CCTCAATTCTTGAAGCCATC

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1020_residues
MDSDVIFSLVQNAALLLAMVFVYDAVPRKQRHEYFFLWRISVGTVIGGITVTTMMTHWEYQPGVFFDARSIILGISGLFF
GGLPTFVAMVIASVYRFLEGGSGWWAGIGIIFSSGLLGSYWRYYRKSFIADLSFKELYAFGFILQVITLLWMFVLPFEMA
ISILSRISFPALIVYPIAFVLLGLLLSRRLEIERDAKIQLQDDFIFRSQFNVGNIGIAISSVDQHWIKVNPRMCQMLQYT
EEELLLKTWAEMTYFDDLQTDLNLFNRMLDGEFDEYEMDKRYVAKDGSIVYTHLTVACQRVNNQVQLVIAGLLDITSQKQ
AESAMSKSQEQLALVLDSSELGLWDWDLKSDKVDRNDYCAKLLGSGVEELNDDGRLWINAIHPQDRLEVLHAMDKHLKGE
NPQYTVEYRLNTFSGETRWILDRGKVASKDANGAPLRVCGTNTDITDRKRGEESLQLAASVYNNSSEAMSVQDSLGNIIT
INSAFTDITGYLEGEVLSKHIRILECDRTSKNQYEQMNMQITQTGRWQGEVWLKHKSGTEFIVWLTINTILDNKGEVYRR
VALFSDITEKKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKKHFALMFLDLDYFKEVNDSLGHDIGDLLLV
ETAKRLKGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRLAEPFNLDNESAYISASIGITLYPDDASSIDGL
LKHADQAMYAAKEQGRNRYHYFTPSMQEYAKYRMLLIRDLRKAIIRKEFEIYYQPIIELTDSKVFKAEALIRWHHPVRGV
VSPGEFIPVAEETGLIIEIGNWVFEQAAKQSAMWRERFGVAIQISINKSPIQFRDEGESFVDWIEQLKKLNLESNGICVE
ITEGLLLDASMGVSEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLETDSNDVTLCEAIIVMAHKL
GMKVIAEGVETEYQKKILFEAGCDYGQGYLFSKPIPVADFEAKYLIGLTELPNEKGSPSQ

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA