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The map label for this gene is yidZ [H]

Identifier: 156978072

GI number: 156978072

Start: 1982557

End: 1983039

Strand: Direct

Name: yidZ [H]

Synonym: VIBHAR_06876

Alternate gene names: 156978072

Gene position: 1982557-1983039 (Clockwise)

Preceding gene: 156978071

Following gene: 156978076

Centisome position: 89.95

GC content: 46.38

Gene sequence:

>483_bases
GTGGGTATCTTTGAGTTTGATGCCCGTTCTAAAACCCATGTCGATACCATCCCCGACACACTGAATTATGCCGAACTAAT
GCGTGACACCTCTGCTTGTATCATGCGAAAAGGACACCCTGCGTTAGAGGAAAAGTGGAACCTCAATACCTTCTTGAAAT
ACCGCCATATTCAAGTCATCACTGGTGGTGTATCTAGTTGGCTATTACATGAAGTTTTGGATACGAAACGACTGGGCATT
GATAACGCCGTCAACATGTCCGACATTTCCAGCGCTGTGAAACTGTGTGAGAAGAGCGACTTGATACTCACCTATCCTTA
CAAAAGCATCCGCGAGTTCGAAGGCAAATCGGATATTGTGATTAAGCCGCTCCCAATCGAGATGGAACCAGGCGGGTTCT
TTCTACTTTGGAACAAGCAACTCGACAATGACCCAAGCCACAAGTGGCTAAGAGAGCTCATCGTCAGTCAGTCTTATGCC
TAA

Upstream 100 bases:

>100_bases
ACCTCAAGCCTTATCCAGTGCGCCAAGGATCACAATAAAAAGTGAGGATTGGAGTAACGGTAGCATTACTCGACTACAAA
GAAGAGAGATCGATTTTGGT

Downstream 100 bases:

>100_bases
TCACAAAGCCTGTAATCAAAGTAGAAAGTACAAAGCTAAGAGTTGATGTACTTTAAATGAACATTCAAACGCCAAAAATA
GAGTGCTTGCAAAGCGATAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MGIFEFDARSKTHVDTIPDTLNYAELMRDTSACIMRKGHPALEEKWNLNTFLKYRHIQVITGGVSSWLLHEVLDTKRLGI
DNAVNMSDISSAVKLCEKSDLILTYPYKSIREFEGKSDIVIKPLPIEMEPGGFFLLWNKQLDNDPSHKWLRELIVSQSYA

Sequences:

>Translated_160_residues
MGIFEFDARSKTHVDTIPDTLNYAELMRDTSACIMRKGHPALEEKWNLNTFLKYRHIQVITGGVSSWLLHEVLDTKRLGI
DNAVNMSDISSAVKLCEKSDLILTYPYKSIREFEGKSDIVIKPLPIEMEPGGFFLLWNKQLDNDPSHKWLRELIVSQSYA
>Mature_159_residues
GIFEFDARSKTHVDTIPDTLNYAELMRDTSACIMRKGHPALEEKWNLNTFLKYRHIQVITGGVSSWLLHEVLDTKRLGID
NAVNMSDISSAVKLCEKSDLILTYPYKSIREFEGKSDIVIKPLPIEMEPGGFFLLWNKQLDNDPSHKWLRELIVSQSYA

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=160, Percent_Identity=31.25, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 18386; Mature: 18255

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFEFDARSKTHVDTIPDTLNYAELMRDTSACIMRKGHPALEEKWNLNTFLKYRHIQVI
CCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHEEEEEEEEE
TGGVSSWLLHEVLDTKRLGIDNAVNMSDISSAVKLCEKSDLILTYPYKSIREFEGKSDIV
ECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCEE
IKPLPIEMEPGGFFLLWNKQLDNDPSHKWLRELIVSQSYA
EECCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GIFEFDARSKTHVDTIPDTLNYAELMRDTSACIMRKGHPALEEKWNLNTFLKYRHIQVI
CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHEEEEEEEEE
TGGVSSWLLHEVLDTKRLGIDNAVNMSDISSAVKLCEKSDLILTYPYKSIREFEGKSDIV
ECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCEE
IKPLPIEMEPGGFFLLWNKQLDNDPSHKWLRELIVSQSYA
EECCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA