Click here to switch to the map view.

The map label for this gene is ybdO [H]

Identifier: 156978071

GI number: 156978071

Start: 1982101

End: 1982358

Strand: Direct

Name: ybdO [H]

Synonym: VIBHAR_06875

Alternate gene names: 156978071

Gene position: 1982101-1982358 (Clockwise)

Preceding gene: 156978070

Following gene: 156978072

Centisome position: 89.93

GC content: 40.7

Gene sequence:

>258_bases
ATGATAAATCTATCCCACTTAATAAAAAATGATATGAACCTGCTGATTTGCTTGTACGTTTTACTACAAGAACGCAGCGT
GAGCAGAACTGCAGAGAAACTATTCTTATCTCAATCGGCCGTCAGTAAACAGCTGACTAAATTGCGCCAAGAGTTTGATG
ACCCATTGTTCGAACGTGAGTCCAAAGGTCTACTACCAACACCAAAAGCGCTAGCACTAGAGAGCAAGCTGCAACAGATT
CTAATGCAAATTGATTAG

Upstream 100 bases:

>100_bases
ATTAAAGACCCTCCCTGTATTTCTGACTTAACTCATTTCAATTAAGTGATATAGTTTCGATTCATAAGCCTCAACTCGTA
AGTTGACTGATAGGAATATC

Downstream 100 bases:

>100_bases
CTCCGAGAGCCAGAAGAGTTTGACCCAGAACGCTCGACACGTGTTTTTAGCATCGACCTTATTGAAACCGCCTACTCCAC
GATTTACCCACGTTTTCTAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MINLSHLIKNDMNLLICLYVLLQERSVSRTAEKLFLSQSAVSKQLTKLRQEFDDPLFERESKGLLPTPKALALESKLQQI
LMQID

Sequences:

>Translated_85_residues
MINLSHLIKNDMNLLICLYVLLQERSVSRTAEKLFLSQSAVSKQLTKLRQEFDDPLFERESKGLLPTPKALALESKLQQI
LMQID
>Mature_85_residues
MINLSHLIKNDMNLLICLYVLLQERSVSRTAEKLFLSQSAVSKQLTKLRQEFDDPLFERESKGLLPTPKALALESKLQQI
LMQID

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=79, Percent_Identity=44.3037974683544, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1790147, Length=60, Percent_Identity=46.6666666666667, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 9786; Mature: 9786

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLSHLIKNDMNLLICLYVLLQERSVSRTAEKLFLSQSAVSKQLTKLRQEFDDPLFERE
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
SKGLLPTPKALALESKLQQILMQID
CCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINLSHLIKNDMNLLICLYVLLQERSVSRTAEKLFLSQSAVSKQLTKLRQEFDDPLFERE
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
SKGLLPTPKALALESKLQQILMQID
CCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]