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The map label for this gene is xerD [C]

Identifier: 156978016

GI number: 156978016

Start: 1930544

End: 1931137

Strand: Reverse

Name: xerD [C]

Synonym: VIBHAR_06813

Alternate gene names: 156978016

Gene position: 1931137-1930544 (Counterclockwise)

Preceding gene: 156978017

Following gene: 156978015

Centisome position: 87.62

GC content: 42.93

Gene sequence:

>594_bases
ATGTGGACGAAGAAAGGTCATCTAACTGGGCAGAAAAAGCCTTTCAAGCTTGAAGACATATGGCGAATTCGTACTCGGCT
CGAAATCGAAGAAAACATCATGGAACTCGCCTTGCTGAATCTCGCCATAGATTGCAAGTTACGATCATGCGATTTACTTA
GAATGAAAGTGAGAGACATATCTTCTGGTGGTGTTATTCAAGACCGTGTGCTCTACAGTCAAAGTAAAACGGGGCGAGAG
GTGCAGTTTGAGATCACTTCCCGTATAGCACAATCGTTAGCACAGTGGATCATGAAAAGCCAAATTACCGCGTCAGATTA
CGTGTTTCCTAGTTCTAGAAAGCAGGGTAAATCCATGAGCTATAGCCGTTATCTAAAAATCATTCGTCGTTGGGCAACAA
AACTTGGCTACGACTCATATCAGTATGGTACTCACTCAATGCGCCGAACGAAAGCAACACTCATTTATGCACGGACAAAG
AACATCCGTGCGGTTCAATTATTGCTCGGACACGTAAAACTCGACAATACCATTCGCTATCTTGGTGTTGAAATAGAAGA
TGCATTAAAGATCTCTGAGAATACCGACTCTTGA

Upstream 100 bases:

>100_bases
CCAACCGTCAAGCATCTTCTTAATTACCAGCACCACTTCTTCTGTATACCATCCACTAACCTTACTAAGGCCACTTCTAA
ACTTAGACTGGAGGTCAATT

Downstream 100 bases:

>100_bases
ACTAGGTCAGCATTTGCTATTGCTAATGGCTGAATTAGAAGCGCTTTACTTAAAGTTATTTATTTACAGTGACTTACTTT
ATTTTAGGTGTATGGCGATG

Product: integrase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Integrase; Tyrosine Recombinase XerD; Phage Integrase/Recombinase; DNA Integration/Recombination/Inversion Protein; Fragmented Site-Specific Recombinase XerC/XerD; Phage Integrase Protein; Site-Specific Recombinase; Truncated Site-Specific Recombinase

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MWTKKGHLTGQKKPFKLEDIWRIRTRLEIEENIMELALLNLAIDCKLRSCDLLRMKVRDISSGGVIQDRVLYSQSKTGRE
VQFEITSRIAQSLAQWIMKSQITASDYVFPSSRKQGKSMSYSRYLKIIRRWATKLGYDSYQYGTHSMRRTKATLIYARTK
NIRAVQLLLGHVKLDNTIRYLGVEIEDALKISENTDS

Sequences:

>Translated_197_residues
MWTKKGHLTGQKKPFKLEDIWRIRTRLEIEENIMELALLNLAIDCKLRSCDLLRMKVRDISSGGVIQDRVLYSQSKTGRE
VQFEITSRIAQSLAQWIMKSQITASDYVFPSSRKQGKSMSYSRYLKIIRRWATKLGYDSYQYGTHSMRRTKATLIYARTK
NIRAVQLLLGHVKLDNTIRYLGVEIEDALKISENTDS
>Mature_197_residues
MWTKKGHLTGQKKPFKLEDIWRIRTRLEIEENIMELALLNLAIDCKLRSCDLLRMKVRDISSGGVIQDRVLYSQSKTGRE
VQFEITSRIAQSLAQWIMKSQITASDYVFPSSRKQGKSMSYSRYLKIIRRWATKLGYDSYQYGTHSMRRTKATLIYARTK
NIRAVQLLLGHVKLDNTIRYLGVEIEDALKISENTDS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22926; Mature: 22926

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWTKKGHLTGQKKPFKLEDIWRIRTRLEIEENIMELALLNLAIDCKLRSCDLLRMKVRDI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCC
SSGGVIQDRVLYSQSKTGREVQFEITSRIAQSLAQWIMKSQITASDYVFPSSRKQGKSMS
CCCCEEHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YSRYLKIIRRWATKLGYDSYQYGTHSMRRTKATLIYARTKNIRAVQLLLGHVKLDNTIRY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCCEEEE
LGVEIEDALKISENTDS
EECCHHHHEECCCCCCC
>Mature Secondary Structure
MWTKKGHLTGQKKPFKLEDIWRIRTRLEIEENIMELALLNLAIDCKLRSCDLLRMKVRDI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCC
SSGGVIQDRVLYSQSKTGREVQFEITSRIAQSLAQWIMKSQITASDYVFPSSRKQGKSMS
CCCCEEHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YSRYLKIIRRWATKLGYDSYQYGTHSMRRTKATLIYARTKNIRAVQLLLGHVKLDNTIRY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCCEEEE
LGVEIEDALKISENTDS
EECCHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA