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The map label for this gene is glcB [H]

Identifier: 156977903

GI number: 156977903

Start: 1831064

End: 1831642

Strand: Reverse

Name: glcB [H]

Synonym: VIBHAR_06695

Alternate gene names: 156977903

Gene position: 1831642-1831064 (Counterclockwise)

Preceding gene: 156977906

Following gene: 156977901

Centisome position: 83.1

GC content: 45.42

Gene sequence:

>579_bases
ATGAATATGCTGAATTTCGATAAAAAAGACATCCAACAACAAGAACGCCCATTTATCGCTGAAGCCGTATTTGCCGTCGA
GGCGGTTAGTGCTGAGCAGCAAAGCGAGAAGCAAGTTAAGGCGAAGCAACTACTGGACCGTATGTTCCCACTGGAGAATG
GTTCACACCAAGACGTATCAAGCTATGTGATTGATTACCGCCATGTGATGGCCTACTTCAAAGACGGTACACACAGCGGT
CTGAAAAGCCCAAAACATTTTGTAGCGTACACTGGTGAGAAAGAAGATCCGAAATCGATTCTATTTAAAGATGAGTCAGG
CAGCCACGTAGAAGTGATGTTTGGCTGTCATAAAGGCACGGGTTGTGTGGAGTTGATGGACATTGATGACATTCAACTGG
AAACACGTACTACCTTCAGCCCTGAGCTAATTGGTAATGCACCGACCGCAATGCGTCATTGGATCAGCCTAATTAAAGGT
GATAAGAAAGGAAAACCGATGGCGTGCAGTGAAGACAAAGAGTACACCGCGAAAAACGGCGACGACTACTTCCTTAGCTA
CTGCTACAGCATTGATTAA

Upstream 100 bases:

>100_bases
GCAAGGAAATTAACCATCCACTTCACAGAATTGCCTGAAACTTAAACAAGGGTTTTAAGTTTTTACTCTAGGAAGAGTGT
TTAAGTGCGAGGAAACGACG

Downstream 100 bases:

>100_bases
TGGTTTAGGAAGTATCATTAATAACGAGCCAGCCCAAGAAAGACAAAACCCCAAGTACATGCTTGGGGTTTTGTCTTTTA
AAAGGGGCGGTATGAGCTGG

Product: malate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNMLNFDKKDIQQQERPFIAEAVFAVEAVSAEQQSEKQVKAKQLLDRMFPLENGSHQDVSSYVIDYRHVMAYFKDGTHSG
LKSPKHFVAYTGEKEDPKSILFKDESGSHVEVMFGCHKGTGCVELMDIDDIQLETRTTFSPELIGNAPTAMRHWISLIKG
DKKGKPMACSEDKEYTAKNGDDYFLSYCYSID

Sequences:

>Translated_192_residues
MNMLNFDKKDIQQQERPFIAEAVFAVEAVSAEQQSEKQVKAKQLLDRMFPLENGSHQDVSSYVIDYRHVMAYFKDGTHSG
LKSPKHFVAYTGEKEDPKSILFKDESGSHVEVMFGCHKGTGCVELMDIDDIQLETRTTFSPELIGNAPTAMRHWISLIKG
DKKGKPMACSEDKEYTAKNGDDYFLSYCYSID
>Mature_192_residues
MNMLNFDKKDIQQQERPFIAEAVFAVEAVSAEQQSEKQVKAKQLLDRMFPLENGSHQDVSSYVIDYRHVMAYFKDGTHSG
LKSPKHFVAYTGEKEDPKSILFKDESGSHVEVMFGCHKGTGCVELMDIDDIQLETRTTFSPELIGNAPTAMRHWISLIKG
DKKGKPMACSEDKEYTAKNGDDYFLSYCYSID

Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]

COG id: COG2225

COG function: function code C; Malate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the malate synthase family. GlcB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789348, Length=172, Percent_Identity=28.4883720930233, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011076
- InterPro:   IPR001465
- InterPro:   IPR006253 [H]

Pfam domain/function: PF01274 Malate_synthase [H]

EC number: =2.3.3.9 [H]

Molecular weight: Translated: 21793; Mature: 21793

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMLNFDKKDIQQQERPFIAEAVFAVEAVSAEQQSEKQVKAKQLLDRMFPLENGSHQDVS
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SYVIDYRHVMAYFKDGTHSGLKSPKHFVAYTGEKEDPKSILFKDESGSHVEVMFGCHKGT
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCC
GCVELMDIDDIQLETRTTFSPELIGNAPTAMRHWISLIKGDKKGKPMACSEDKEYTAKNG
CEEEEEECCCEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DDYFLSYCYSID
CCEEEEEEEECC
>Mature Secondary Structure
MNMLNFDKKDIQQQERPFIAEAVFAVEAVSAEQQSEKQVKAKQLLDRMFPLENGSHQDVS
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SYVIDYRHVMAYFKDGTHSGLKSPKHFVAYTGEKEDPKSILFKDESGSHVEVMFGCHKGT
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCC
GCVELMDIDDIQLETRTTFSPELIGNAPTAMRHWISLIKGDKKGKPMACSEDKEYTAKNG
CEEEEEECCCEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DDYFLSYCYSID
CCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA