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The map label for this gene is sodC [H]

Identifier: 156977790

GI number: 156977790

Start: 1725906

End: 1726418

Strand: Reverse

Name: sodC [H]

Synonym: VIBHAR_06578

Alternate gene names: 156977790

Gene position: 1726418-1725906 (Counterclockwise)

Preceding gene: 156977791

Following gene: 156977787

Centisome position: 78.33

GC content: 47.56

Gene sequence:

>513_bases
ATGAAACTAAGTGCTTTAATGGCGGCTTGCGTTTTGCTATCAGGTTCGGCTCTTGCCGATGAGTTAACGGTGGAAATGAC
CGATCTTGCAACAGGTAAGTCTGTTGGCGAAGTTGCGATTACAACTAGCGATTATGGTACGGTTTTCACTCCAAACTTAA
GCGGTCTTCCATCTGGTGCTCATGGTTTCCATATCCACGCTAATGGCTCTTGTGATAGCAGAATTAAAGATGGAAAAACA
GTGTTAGGTGGTGCTGCTGGTGGTCACTATGACCCTAAAGGTACTGGTCAGCATGGATTTCCTTGGACTGATGGCAACCA
CTTAGGTGATCTACCTGCAATGTACGTAGATGCAAACGGCATGGCGAATCAACCTGTGCTTGCACCACGAGTTAAGCTAG
CGGATGTAAAAGGTCGAGCGCTTATGGTTCACTTTGGCGGTGACAACCACTCAGATCATCCAGCGAAACTTGGCGGTGGT
GGTGCGCGCATGGTTTGTGGCGTAATTAAGTAA

Upstream 100 bases:

>100_bases
TCACGCTTAGTTCTCCTATGGGAAACTCGCGATGAAATAAGTAAAGAGCCAAGCATATGCTTGAGTTCAAAAACAATACT
AACAATAAGGATCTTATTTT

Downstream 100 bases:

>100_bases
TCCCCCAAGCTTAGTACACGCAAAAACAAAAAAACGGTCCAGTTTTGCTGGACCGTTTTTTGTTATTCAGAGGGGGACTA
AGCGAAGTTTTCTACGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKLSALMAACVLLSGSALADELTVEMTDLATGKSVGEVAITTSDYGTVFTPNLSGLPSGAHGFHIHANGSCDSRIKDGKT
VLGGAAGGHYDPKGTGQHGFPWTDGNHLGDLPAMYVDANGMANQPVLAPRVKLADVKGRALMVHFGGDNHSDHPAKLGGG
GARMVCGVIK

Sequences:

>Translated_170_residues
MKLSALMAACVLLSGSALADELTVEMTDLATGKSVGEVAITTSDYGTVFTPNLSGLPSGAHGFHIHANGSCDSRIKDGKT
VLGGAAGGHYDPKGTGQHGFPWTDGNHLGDLPAMYVDANGMANQPVLAPRVKLADVKGRALMVHFGGDNHSDHPAKLGGG
GARMVCGVIK
>Mature_170_residues
MKLSALMAACVLLSGSALADELTVEMTDLATGKSVGEVAITTSDYGTVFTPNLSGLPSGAHGFHIHANGSCDSRIKDGKT
VLGGAAGGHYDPKGTGQHGFPWTDGNHLGDLPAMYVDANGMANQPVLAPRVKLADVKGRALMVHFGGDNHSDHPAKLGGG
GARMVCGVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=173, Percent_Identity=51.4450867052023, Blast_Score=160, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17334; Mature: 17334

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS00087 SOD_CU_ZN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSALMAACVLLSGSALADELTVEMTDLATGKSVGEVAITTSDYGTVFTPNLSGLPSGA
CCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCCCCCC
HGFHIHANGSCDSRIKDGKTVLGGAAGGHYDPKGTGQHGFPWTDGNHLGDLPAMYVDANG
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
MANQPVLAPRVKLADVKGRALMVHFGGDNHSDHPAKLGGGGARMVCGVIK
CCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEECC
>Mature Secondary Structure
MKLSALMAACVLLSGSALADELTVEMTDLATGKSVGEVAITTSDYGTVFTPNLSGLPSGA
CCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCCCCCC
HGFHIHANGSCDSRIKDGKTVLGGAAGGHYDPKGTGQHGFPWTDGNHLGDLPAMYVDANG
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
MANQPVLAPRVKLADVKGRALMVHFGGDNHSDHPAKLGGGGARMVCGVIK
CCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3805055; 6884993; 3855538; 8917495; 9878406 [H]