Click here to switch to the map view.

The map label for this gene is ugpA [H]

Identifier: 156977609

GI number: 156977609

Start: 1565981

End: 1566862

Strand: Direct

Name: ugpA [H]

Synonym: VIBHAR_06397

Alternate gene names: 156977609

Gene position: 1565981-1566862 (Clockwise)

Preceding gene: 156977608

Following gene: 156977610

Centisome position: 71.05

GC content: 48.64

Gene sequence:

>882_bases
ATGTCCTCACCTGTTGTTTTTAAACATAAATGGCTTCCGGTTGCGTTGATTGCACCTCAGTTATTGATCACCTTGGTGTT
CTTCATCTGGCCGGCAGGACAAGCCATTTTCCAATCTTCACAACTTGAAGATGCTTTCGGTATGAGCCGTGAGTTTGTGG
GTTTGGAGAACTTTGAAAAGCTCTTCCATGATCCACTGTACCTAGATTCGTTAATGACCACGCTGCAATTTAGCATCAGC
GTTGCGGTGCTCGCGTTGGTCAGTGCGCTTATCCTTTCCGCTTTTGCCGAGCAAATCATCCGCGGTGCAACCATGTATCG
TACATTCTTGATTTGGCCTTATGCGGTCGCTCCGGTTGTCGCGGGTTCGCTGTGGTTATTCCTGTTCGACCCAACCATCG
GTGTGATGACTGAGTTATTGCATCTGTTTGGCGTAGACTGGAACCCAACGCTCAATGGCGCCCATGCAATGTGGATGGTG
ATCATCACCTCGACATGGAAGCAAATCAGCTACAACTTTCTGTTCTTCCTTGCGGCGCTTCAATCGGTACCCAAGTCTCT
GCACGAAGCTGCGGCCATTGACGGAAGTGGTCCAATCAAACGCTTTATCACTATTAGCTTCCCGCTGATTTCGCCAACCA
GCTTCTTCTTGTTGGTCGTGAACTTTGTCTACGCGTTCTTTGATACGTTCGCCATCATCCACGCGATGACGCAAGGCGGC
CCGAGTAACAGCACTTCCACCTTGGTTTACAAAGTCTACAACGATGGTTTTATTGGTCTGGACTTAGGCTCATCGGCCGC
GCAATCCGTCATCCTGATGATATTGGTCGCTTCCCTGACTGTGATTCAATTTAAGTATGTTGAGAAGAAGGTAGCGTACT
AA

Upstream 100 bases:

>100_bases
CTGAGTCTTATTCACATAACCACTCAGATACGCACTCTCCCCGCCCACTTTGGGTGGGGAATTCGTTCACACACCTTGCC
TGTTTTACTTTGGTATTTGT

Downstream 100 bases:

>100_bases
TGGTAGAAAGAAGACCGTTTTTTAATCTGTTTTGCCATGTCATTTTGACTCTTGGCATCATTTCGATTGCGCTTCCGGTT
TGGATTGCAATCGTAGCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSSPVVFKHKWLPVALIAPQLLITLVFFIWPAGQAIFQSSQLEDAFGMSREFVGLENFEKLFHDPLYLDSLMTTLQFSIS
VAVLALVSALILSAFAEQIIRGATMYRTFLIWPYAVAPVVAGSLWLFLFDPTIGVMTELLHLFGVDWNPTLNGAHAMWMV
IITSTWKQISYNFLFFLAALQSVPKSLHEAAAIDGSGPIKRFITISFPLISPTSFFLLVVNFVYAFFDTFAIIHAMTQGG
PSNSTSTLVYKVYNDGFIGLDLGSSAAQSVILMILVASLTVIQFKYVEKKVAY

Sequences:

>Translated_293_residues
MSSPVVFKHKWLPVALIAPQLLITLVFFIWPAGQAIFQSSQLEDAFGMSREFVGLENFEKLFHDPLYLDSLMTTLQFSIS
VAVLALVSALILSAFAEQIIRGATMYRTFLIWPYAVAPVVAGSLWLFLFDPTIGVMTELLHLFGVDWNPTLNGAHAMWMV
IITSTWKQISYNFLFFLAALQSVPKSLHEAAAIDGSGPIKRFITISFPLISPTSFFLLVVNFVYAFFDTFAIIHAMTQGG
PSNSTSTLVYKVYNDGFIGLDLGSSAAQSVILMILVASLTVIQFKYVEKKVAY
>Mature_292_residues
SSPVVFKHKWLPVALIAPQLLITLVFFIWPAGQAIFQSSQLEDAFGMSREFVGLENFEKLFHDPLYLDSLMTTLQFSISV
AVLALVSALILSAFAEQIIRGATMYRTFLIWPYAVAPVVAGSLWLFLFDPTIGVMTELLHLFGVDWNPTLNGAHAMWMVI
ITSTWKQISYNFLFFLAALQSVPKSLHEAAAIDGSGPIKRFITISFPLISPTSFFLLVVNFVYAFFDTFAIIHAMTQGGP
SNSTSTLVYKVYNDGFIGLDLGSSAAQSVILMILVASLTVIQFKYVEKKVAY

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=292, Percent_Identity=60.2739726027397, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1790465, Length=259, Percent_Identity=28.957528957529, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787570, Length=248, Percent_Identity=26.6129032258064, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32521; Mature: 32389

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPVVFKHKWLPVALIAPQLLITLVFFIWPAGQAIFQSSQLEDAFGMSREFVGLENFEK
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCHHHHHH
LFHDPLYLDSLMTTLQFSISVAVLALVSALILSAFAEQIIRGATMYRTFLIWPYAVAPVV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSLWLFLFDPTIGVMTELLHLFGVDWNPTLNGAHAMWMVIITSTWKQISYNFLFFLAAL
HHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVPKSLHEAAAIDGSGPIKRFITISFPLISPTSFFLLVVNFVYAFFDTFAIIHAMTQGG
HHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSNSTSTLVYKVYNDGFIGLDLGSSAAQSVILMILVASLTVIQFKYVEKKVAY
CCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSPVVFKHKWLPVALIAPQLLITLVFFIWPAGQAIFQSSQLEDAFGMSREFVGLENFEK
CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCHHHHHH
LFHDPLYLDSLMTTLQFSISVAVLALVSALILSAFAEQIIRGATMYRTFLIWPYAVAPVV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSLWLFLFDPTIGVMTELLHLFGVDWNPTLNGAHAMWMVIITSTWKQISYNFLFFLAAL
HHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVPKSLHEAAAIDGSGPIKRFITISFPLISPTSFFLLVVNFVYAFFDTFAIIHAMTQGG
HHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSNSTSTLVYKVYNDGFIGLDLGSSAAQSVILMILVASLTVIQFKYVEKKVAY
CCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA