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The map label for this gene is ugpQ [H]

Identifier: 156977607

GI number: 156977607

Start: 1563563

End: 1564315

Strand: Reverse

Name: ugpQ [H]

Synonym: VIBHAR_06395

Alternate gene names: 156977607

Gene position: 1564315-1563563 (Counterclockwise)

Preceding gene: 156977613

Following gene: 156977606

Centisome position: 70.98

GC content: 47.14

Gene sequence:

>753_bases
ATGACAATAACGGCACACCGTGGCTTATCCAGTTTGGCTCCAGAAAACACCTTATCGGCAATCCAACGCGCCATTGAATT
CGGTTGCGAATGGATTGAAATCGACGTTCAGCTCAGTGCTGACAACATTCCTGTGGTTATTCATGACAACACCGTAAACC
GCTGCACGAACGGCCGAGGCAAAGTCAAAGAGCTGACTTGGCATGAATTAAGATTGTTGGACGCTGGTTTATGGTTTGGC
GATGACTTCGCAGGCGAACATATTCCTAATTTAGAAGAGACGCTTGAGCTCACTGCGAGAGCGGGTGTGAAGCTCAATAT
TGAATTGAAGATCTACTCAGGCGATGAAATTGATCTGCTGTGCGAAAAGGTTGCACAGGTCGTTGAGCGCTTGGGCGTCG
AGGCGGATGCCATTCTCTTTTCTAGCTTCAACACTGAAGCCTTGATGACGATGAGAAATTACCTGCCAGAAGTGAGAAGA
GGGCAGTTATGGCAAGAGATTCCAGACGATTTTTCTATCGTGTTGCAACACATCGATGCTTACAGTGTGCATTGTGATTA
CCGCTTCTTGACTGAGGCACAAGCGAAGCAGATCAAGCAGTTTGGCTACCAGCTGTTTTGCTATACACCGAACTTTCCCC
AATTAGTTGAAGCACATTGGCAGTGGGGAGTGGATATGATGATTACCGACATCCCGCAACGTTACAAAGTAGAAGTGCCT
TCAGCCAAACGAGAACCCGCACTGAATGAATAA

Upstream 100 bases:

>100_bases
AACTTATTTGAGCATTATTTTCGTCACGATTTTGTAATCAAATCGTCATTGAGGACTGAGATAGTTCATTTGAAAACAAA
TGAAAAAGACGGAATAAAAA

Downstream 100 bases:

>100_bases
CCTAAACGTCCGCCAGCAAAGCATCATTGAACTGGTTCATCAGCAAGAATATTGTTCGATAGAAGAGCTTGCTCAACGCT
TTGAAGTCACGACGCAAACC

Product: lycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTITAHRGLSSLAPENTLSAIQRAIEFGCEWIEIDVQLSADNIPVVIHDNTVNRCTNGRGKVKELTWHELRLLDAGLWFG
DDFAGEHIPNLEETLELTARAGVKLNIELKIYSGDEIDLLCEKVAQVVERLGVEADAILFSSFNTEALMTMRNYLPEVRR
GQLWQEIPDDFSIVLQHIDAYSVHCDYRFLTEAQAKQIKQFGYQLFCYTPNFPQLVEAHWQWGVDMMITDIPQRYKVEVP
SAKREPALNE

Sequences:

>Translated_250_residues
MTITAHRGLSSLAPENTLSAIQRAIEFGCEWIEIDVQLSADNIPVVIHDNTVNRCTNGRGKVKELTWHELRLLDAGLWFG
DDFAGEHIPNLEETLELTARAGVKLNIELKIYSGDEIDLLCEKVAQVVERLGVEADAILFSSFNTEALMTMRNYLPEVRR
GQLWQEIPDDFSIVLQHIDAYSVHCDYRFLTEAQAKQIKQFGYQLFCYTPNFPQLVEAHWQWGVDMMITDIPQRYKVEVP
SAKREPALNE
>Mature_249_residues
TITAHRGLSSLAPENTLSAIQRAIEFGCEWIEIDVQLSADNIPVVIHDNTVNRCTNGRGKVKELTWHELRLLDAGLWFGD
DFAGEHIPNLEETLELTARAGVKLNIELKIYSGDEIDLLCEKVAQVVERLGVEADAILFSSFNTEALMTMRNYLPEVRRG
QLWQEIPDDFSIVLQHIDAYSVHCDYRFLTEAQAKQIKQFGYQLFCYTPNFPQLVEAHWQWGVDMMITDIPQRYKVEVPS
AKREPALNE

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=97, Percent_Identity=43.298969072165, Blast_Score=85, Evalue=5e-17,
Organism=Escherichia coli, GI1789858, Length=228, Percent_Identity=35.9649122807018, Blast_Score=144, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI17561436, Length=243, Percent_Identity=23.0452674897119, Blast_Score=87, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 28595; Mature: 28464

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITAHRGLSSLAPENTLSAIQRAIEFGCEWIEIDVQLSADNIPVVIHDNTVNRCTNGRG
CEEECCCCCHHCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCHHHCCCCCC
KVKELTWHELRLLDAGLWFGDDFAGEHIPNLEETLELTARAGVKLNIELKIYSGDEIDLL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHH
CEKVAQVVERLGVEADAILFSSFNTEALMTMRNYLPEVRRGQLWQEIPDDFSIVLQHIDA
HHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHCCHHHCCHHHHHCCHHHHHHHHHCCC
YSVHCDYRFLTEAQAKQIKQFGYQLFCYTPNFPQLVEAHWQWGVDMMITDIPQRYKVEVP
EEEEECHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCEEEECC
SAKREPALNE
CCCCCCCCCC
>Mature Secondary Structure 
TITAHRGLSSLAPENTLSAIQRAIEFGCEWIEIDVQLSADNIPVVIHDNTVNRCTNGRG
EEECCCCCHHCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCHHHCCCCCC
KVKELTWHELRLLDAGLWFGDDFAGEHIPNLEETLELTARAGVKLNIELKIYSGDEIDLL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCHHHH
CEKVAQVVERLGVEADAILFSSFNTEALMTMRNYLPEVRRGQLWQEIPDDFSIVLQHIDA
HHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHCCHHHCCHHHHHCCHHHHHHHHHCCC
YSVHCDYRFLTEAQAKQIKQFGYQLFCYTPNFPQLVEAHWQWGVDMMITDIPQRYKVEVP
EEEEECHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCEEEECC
SAKREPALNE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]