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The map label for this gene is glpR [H]

Identifier: 156977606

GI number: 156977606

Start: 1562818

End: 1563570

Strand: Reverse

Name: glpR [H]

Synonym: VIBHAR_06394

Alternate gene names: 156977606

Gene position: 1563570-1562818 (Counterclockwise)

Preceding gene: 156977607

Following gene: 156977603

Centisome position: 70.94

GC content: 48.87

Gene sequence:

>753_bases
ATGAATAACCTAAACGTCCGCCAGCAAAGCATCATTGAACTGGTTCATCAGCAAGAATATTGTTCGATAGAAGAGCTTGC
TCAACGCTTTGAAGTCACGACGCAAACCATTCGACGTGACATCAATCAGCTTTGCCAATTAGGACTGACCCGACGCCATC
ATGGTGGTGTCGGATTGCCTGCTACCTTAAGCAACCGCAGTTATGCCTCTCGCCAAGTCACCAATCAACAAGAAAAGCAG
ACCATCGCCGATGAAGTGGTCAAAGCAATCCCTAACGGTTCGACTTTATTTCTGGGTATCGGCACGACTATCGCGTTGAT
TGCCGAGCGTTTGGCGAACCACAGCGAGCTTCGTGTGGTGACGAATAACTTCGAAGCGGCACACATTCTTTCTCACTTTG
AGAATATTGAAACTTGGATTCCCGGTGGGCGTATTCGTACCAACGATCGCGACGTGGTAGATGGCTCCGCAGAGCTGTTT
TATGGTCAGTTCTCGGCGGATATTGGCATTATTGGTTGTGCAGGCGTGACCGAAATCGCGCAGTCGCATTCCGACATGAT
CAACCTTGGCAGCACAACGATTGATACTCAGTCGTTCGCAATGGAACACGAATTACGAGAAGCCAAAGTGAGCCAAGCGA
TTTTGGCTAACTCGGAGCAAAAGTGGCTGGTGGCGAACAACAGCAAATGGCAGCGCAGAGCCAATACTAAGGTGGCTCCG
CTTAGTTATTTTGATCGCGTTTTCAGTAACTAA

Upstream 100 bases:

>100_bases
GTTGAAGCACATTGGCAGTGGGGAGTGGATATGATGATTACCGACATCCCGCAACGTTACAAAGTAGAAGTGCCTTCAGC
CAAACGAGAACCCGCACTGA

Downstream 100 bases:

>100_bases
TAAAAGAAGAATAAAAGAACACAAAAAAGCCGCCATCACAGGCTAACTCCTATCACTTAACGTGTTTGGAGCGAACTGGA
TAGCGAGTCTTACTCATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNNLNVRQQSIIELVHQQEYCSIEELAQRFEVTTQTIRRDINQLCQLGLTRRHHGGVGLPATLSNRSYASRQVTNQQEKQ
TIADEVVKAIPNGSTLFLGIGTTIALIAERLANHSELRVVTNNFEAAHILSHFENIETWIPGGRIRTNDRDVVDGSAELF
YGQFSADIGIIGCAGVTEIAQSHSDMINLGSTTIDTQSFAMEHELREAKVSQAILANSEQKWLVANNSKWQRRANTKVAP
LSYFDRVFSN

Sequences:

>Translated_250_residues
MNNLNVRQQSIIELVHQQEYCSIEELAQRFEVTTQTIRRDINQLCQLGLTRRHHGGVGLPATLSNRSYASRQVTNQQEKQ
TIADEVVKAIPNGSTLFLGIGTTIALIAERLANHSELRVVTNNFEAAHILSHFENIETWIPGGRIRTNDRDVVDGSAELF
YGQFSADIGIIGCAGVTEIAQSHSDMINLGSTTIDTQSFAMEHELREAKVSQAILANSEQKWLVANNSKWQRRANTKVAP
LSYFDRVFSN
>Mature_250_residues
MNNLNVRQQSIIELVHQQEYCSIEELAQRFEVTTQTIRRDINQLCQLGLTRRHHGGVGLPATLSNRSYASRQVTNQQEKQ
TIADEVVKAIPNGSTLFLGIGTTIALIAERLANHSELRVVTNNFEAAHILSHFENIETWIPGGRIRTNDRDVVDGSAELF
YGQFSADIGIIGCAGVTEIAQSHSDMINLGSTTIDTQSFAMEHELREAKVSQAILANSEQKWLVANNSKWQRRANTKVAP
LSYFDRVFSN

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789829, Length=244, Percent_Identity=38.5245901639344, Blast_Score=173, Evalue=9e-45,
Organism=Escherichia coli, GI87082344, Length=246, Percent_Identity=32.520325203252, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789059, Length=245, Percent_Identity=28.1632653061224, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788069, Length=246, Percent_Identity=24.390243902439, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI226510968, Length=247, Percent_Identity=27.5303643724696, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789519, Length=245, Percent_Identity=24.4897959183673, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787540, Length=248, Percent_Identity=23.7903225806452, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27936; Mature: 27936

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLNVRQQSIIELVHQQEYCSIEELAQRFEVTTQTIRRDINQLCQLGLTRRHHGGVGLP
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATLSNRSYASRQVTNQQEKQTIADEVVKAIPNGSTLFLGIGTTIALIAERLANHSELRVV
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEE
TNNFEAAHILSHFENIETWIPGGRIRTNDRDVVDGSAELFYGQFSADIGIIGCAGVTEIA
ECCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHEEEEECCCCEEEEECCHHHHHH
QSHSDMINLGSTTIDTQSFAMEHELREAKVSQAILANSEQKWLVANNSKWQRRANTKVAP
HHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCH
LSYFDRVFSN
HHHHHHHHCC
>Mature Secondary Structure
MNNLNVRQQSIIELVHQQEYCSIEELAQRFEVTTQTIRRDINQLCQLGLTRRHHGGVGLP
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATLSNRSYASRQVTNQQEKQTIADEVVKAIPNGSTLFLGIGTTIALIAERLANHSELRVV
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEE
TNNFEAAHILSHFENIETWIPGGRIRTNDRDVVDGSAELFYGQFSADIGIIGCAGVTEIA
ECCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHEEEEECCCCEEEEECCHHHHHH
QSHSDMINLGSTTIDTQSFAMEHELREAKVSQAILANSEQKWLVANNSKWQRRANTKVAP
HHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCH
LSYFDRVFSN
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8752340; 10984043 [H]