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The map label for this gene is tdcF [C]

Identifier: 156977564

GI number: 156977564

Start: 1520807

End: 1521085

Strand: Reverse

Name: tdcF [C]

Synonym: VIBHAR_06352

Alternate gene names: 156977564

Gene position: 1521085-1520807 (Counterclockwise)

Preceding gene: 156977565

Following gene: 156977562

Centisome position: 69.01

GC content: 48.03

Gene sequence:

>279_bases
ATGACTGACGGCGAAGTGGTAGAAGGCGGTATCGTTGACCAGTCTCGCCTAGCGATTCAAAACTGTGTTGATATCATGGA
GGAAGCAGGCTACAAGCTAGCTGACGTGGTACACGTAAAAGTGGTACTAACGGATTCTCGTTACTTCCAATCGTTCAATA
AAGTGTTCAGAGAGTTCTTTGGTGATCACCCAACTGCACGTATTTGCATGGTGTGTGACCTCGTGGTGGACGTGAAAGTT
GAAGTCGATGTGACTTGCTACCGCGAAGATCGCCGATAG

Upstream 100 bases:

>100_bases
GTAGAAGGCGGCGTAGGTACTGGCGGTCAACATTTACCATTTACCATTTGCACGTGCAACGGAAGCGGGCGGCTTCTTAT
ACGTATCGGGTCAAACACCA

Downstream 100 bases:

>100_bases
AAATCACACTTTGCCTAATTAAATAAAATAGAGTGCCGGAAATAATTACTTTCCTGTTATTATCTTTTTGGCACTCTCAC
TCCCTACATAAATATAATTT

Product: ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MTDGEVVEGGIVDQSRLAIQNCVDIMEEAGYKLADVVHVKVVLTDSRYFQSFNKVFREFFGDHPTARICMVCDLVVDVKV
EVDVTCYREDRR

Sequences:

>Translated_92_residues
MTDGEVVEGGIVDQSRLAIQNCVDIMEEAGYKLADVVHVKVVLTDSRYFQSFNKVFREFFGDHPTARICMVCDLVVDVKV
EVDVTCYREDRR
>Mature_91_residues
TDGEVVEGGIVDQSRLAIQNCVDIMEEAGYKLADVVHVKVVLTDSRYFQSFNKVFREFFGDHPTARICMVCDLVVDVKVE
VDVTCYREDRR

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 10520; Mature: 10389

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDGEVVEGGIVDQSRLAIQNCVDIMEEAGYKLADVVHVKVVLTDSRYFQSFNKVFREFF
CCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEHEEEEEEEEECHHHHHHHHHHHHHHH
GDHPTARICMVCDLVVDVKVEVDVTCYREDRR
CCCCCHHHHHHHHHHEEEEEEEEEEEEECCCC
>Mature Secondary Structure 
TDGEVVEGGIVDQSRLAIQNCVDIMEEAGYKLADVVHVKVVLTDSRYFQSFNKVFREFF
CCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEHEEEEEEEEECHHHHHHHHHHHHHHH
GDHPTARICMVCDLVVDVKVEVDVTCYREDRR
CCCCCHHHHHHHHHHEEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]