Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 156977545

GI number: 156977545

Start: 1504427

End: 1505071

Strand: Reverse

Name: ykfC [H]

Synonym: VIBHAR_06333

Alternate gene names: 156977545

Gene position: 1505071-1504427 (Counterclockwise)

Preceding gene: 156977548

Following gene: 156977541

Centisome position: 68.29

GC content: 48.06

Gene sequence:

>645_bases
ATGGAACAAATCTGCTCCTCAACCAACCTGAATCAAGCTTTACGAAGAGTGAAGAAGAACAAGGGATGTGCAGGTGTCGA
CAAACTCGACATAGATGCAACTATCTTTAAGCTTCGACAAGCTTCAAACGGGCAAGCGCTTCGCCAGAGTCTTCTGGATG
GAAGCTACCGACCTCAACCCGTTCTTGGTGTGGGAATCCCCAAACCGAGTGGTGGCGTCAGACAACTAGGTATCCCAACA
GTGCTCGATAGAATTGTCCAACAGGCAATCACCTCAGTACTGTCAGATATCTATGAAGCTAAGTTCTCCAATAGCAGTTA
CGGATTTAGACCCAACCGCAGTGCACATCATGCGCTAGCGGCAGCCAGTCGCTACATCCGAGAGGGGCGAGGTTATGTAG
TAGATATCGACCTAGCGAAATACTTCGATACCGTTAATCACGATAGACTGATGCACAGACTGTCAGAGGATATCGCGGAT
AAACGAGTGTTGAAGCTCATCAGGTCATATCTACAGGCAGGCATAATGCGAAACGGTTTAGTCGAACAGAGACAACGAGG
GACACCACAGGGTGGTCCATTATCTCCGTTGCTATCCGATATCGTATTAGATGAACTGGATAAAGAGCTAGAGCGTAGAG
GCTGA

Upstream 100 bases:

>100_bases
CCCAATGGGCGATACCGCAAGTAAAGCTCACGGTGACGAAGAATGGCAAGCATGGTCGGCGTAGACAGGAGGACGAGTCT
TGGTGACCTCAACTTCGTTG

Downstream 100 bases:

>100_bases
GGGATCCCCACATCTTTTCACCGGAACTCTGCCGCACTTATCGCTTTGAGGCTGAGGGATCCCCACATCTTTTCACCGGA
ACTCTGCCGCACTTATCGCT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSDIVLDELDKELERRG

Sequences:

>Translated_214_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSDIVLDELDKELERRG
>Mature_214_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSDIVLDELDKELERRG

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=166, Percent_Identity=36.144578313253, Blast_Score=108, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6226521, Length=204, Percent_Identity=33.8235294117647, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 23781; Mature: 23781

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALA
EEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGL
HHHHHHHCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEQRQRGTPQGGPLSPLLSDIVLDELDKELERRG
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALA
EEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGL
HHHHHHHCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEQRQRGTPQGGPLSPLLSDIVLDELDKELERRG
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]