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The map label for this gene is lsrR [H]

Identifier: 156977468

GI number: 156977468

Start: 1434715

End: 1435716

Strand: Reverse

Name: lsrR [H]

Synonym: VIBHAR_06255

Alternate gene names: 156977468

Gene position: 1435716-1434715 (Counterclockwise)

Preceding gene: 156977471

Following gene: 156977467

Centisome position: 65.14

GC content: 48.6

Gene sequence:

>1002_bases
ATGAGCAGTTCTAATCAAGACATTTCTATTGAAAGCACAGATTTACTAACTGAGATCTCCGTTGCCTATTATCAAGACGG
TGCGACCCAAGAAGAGATCTCGAAAAAGTTTTCCATATCGCGGGCCAAAGTAGGGCGAATGCTGAAGCAGGCTCGTGATG
AAGGCATTGTAGAGATTACCGTAAAATATCACCCTGTGTTTAGCGCCAAGATAGAGCAGCGCCTCATCGAACGCTTTGGT
GTGAAACGAGCGTTGGTCGCTTTGGACCAACCTAATGAAGAAGCGCAGCGTCTCCAAGTGTCTGGTTTGGTCTCTAACTA
CCTGACGAGTACTTTAAAGAACGGCATGGTGGTGACGGTAGGGCAAGGGCGTAACGTTTCTTCTGTAGCTCACCATATTG
GTGTTATCACTCCGCGTGATTGTAAGTTTGTGTGCGGTATTGGCGGGATTCACCCTCGTGGCGGTATGTACAATGCGGAC
CACGTTTGCCGACAATTCGCCAAGAAATACGGCGGCACATCGGAAACCCTGTATGCCCCTGCCTACGCTGAAAACCGAGA
GCAAAAGGTGGCCTTTATGCAAAACGCCACGGTTAAACAGACTCTGGACTTGGCGCGCAAGGCGGATGTCGCTCTTGTTG
GTATCGGTGATATGAGTGAAAACAGCTACATGGTTGACCTTGGCTGGTTTACTCCAGATGAAGTGGTGCAATCCCGTTTG
ATGCAAGGCGTCGTAGGGGACTTTGCGGGTTATGACTTCTTTGACATCCACGGCGATGTAGCAAACACAGTAATGAGTGA
CCGAGTCATCGGCTTAGGTATTGAAGAGTTTCGTCCAATTGCAGAAGTGATTGCGATTGCGGCAGAAAACAGTAAACCAT
TGGCGCTACTTGGGGCCTTAAGAACTGGCGCGATAGATGTTATTGCAACCAGCGTTAGTAATGCACTGACGGTTCTTAAC
TTGGATGAGCAGATGCACGGCAAAAGTACATCAGAGGTTTAG

Upstream 100 bases:

>100_bases
GCAAATGTCGCAGTAAAATTGGAAGGTAACATATGCTAAGTCAATGAGCGGATGCTCACTAATGCATACAATGTCGATCC
TCTAAAAGGGCGAGTAAAAC

Downstream 100 bases:

>100_bases
CACAAATAATATGCAAACTATGTAATCAGGCTGCGAGGATTTATAAATGACTCGCAGCCTGATTTCGTTTCCAAGTTAAA
AATAATCCTCAGGGGTAATT

Product: deoxyribonucleoside regulator/dihydroxyacetone kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSSSNQDISIESTDLLTEISVAYYQDGATQEEISKKFSISRAKVGRMLKQARDEGIVEITVKYHPVFSAKIEQRLIERFG
VKRALVALDQPNEEAQRLQVSGLVSNYLTSTLKNGMVVTVGQGRNVSSVAHHIGVITPRDCKFVCGIGGIHPRGGMYNAD
HVCRQFAKKYGGTSETLYAPAYAENREQKVAFMQNATVKQTLDLARKADVALVGIGDMSENSYMVDLGWFTPDEVVQSRL
MQGVVGDFAGYDFFDIHGDVANTVMSDRVIGLGIEEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIATSVSNALTVLN
LDEQMHGKSTSEV

Sequences:

>Translated_333_residues
MSSSNQDISIESTDLLTEISVAYYQDGATQEEISKKFSISRAKVGRMLKQARDEGIVEITVKYHPVFSAKIEQRLIERFG
VKRALVALDQPNEEAQRLQVSGLVSNYLTSTLKNGMVVTVGQGRNVSSVAHHIGVITPRDCKFVCGIGGIHPRGGMYNAD
HVCRQFAKKYGGTSETLYAPAYAENREQKVAFMQNATVKQTLDLARKADVALVGIGDMSENSYMVDLGWFTPDEVVQSRL
MQGVVGDFAGYDFFDIHGDVANTVMSDRVIGLGIEEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIATSVSNALTVLN
LDEQMHGKSTSEV
>Mature_332_residues
SSSNQDISIESTDLLTEISVAYYQDGATQEEISKKFSISRAKVGRMLKQARDEGIVEITVKYHPVFSAKIEQRLIERFGV
KRALVALDQPNEEAQRLQVSGLVSNYLTSTLKNGMVVTVGQGRNVSSVAHHIGVITPRDCKFVCGIGGIHPRGGMYNADH
VCRQFAKKYGGTSETLYAPAYAENREQKVAFMQNATVKQTLDLARKADVALVGIGDMSENSYMVDLGWFTPDEVVQSRLM
QGVVGDFAGYDFFDIHGDVANTVMSDRVIGLGIEEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIATSVSNALTVLNL
DEQMHGKSTSEV

Specific function: In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFGE operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho- AI-2, leading to the transcription of the lsr genes [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=313, Percent_Identity=25.8785942492013, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=23.0031948881789, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36254; Mature: 36122

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSNQDISIESTDLLTEISVAYYQDGATQEEISKKFSISRAKVGRMLKQARDEGIVEIT
CCCCCCCEEEEHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VKYHPVFSAKIEQRLIERFGVKRALVALDQPNEEAQRLQVSGLVSNYLTSTLKNGMVVTV
EEECCCHHHHHHHHHHHHHCHHHEEHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GQGRNVSSVAHHIGVITPRDCKFVCGIGGIHPRGGMYNADHVCRQFAKKYGGTSETLYAP
CCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
AYAENREQKVAFMQNATVKQTLDLARKADVALVGIGDMSENSYMVDLGWFTPDEVVQSRL
HHHCCCHHHHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
MQGVVGDFAGYDFFDIHGDVANTVMSDRVIGLGIEEFRPIAEVIAIAAENSKPLALLGAL
HHHHHHHHCCCCEEECCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEHHH
RTGAIDVIATSVSNALTVLNLDEQMHGKSTSEV
HHCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
>Mature Secondary Structure 
SSSNQDISIESTDLLTEISVAYYQDGATQEEISKKFSISRAKVGRMLKQARDEGIVEIT
CCCCCCEEEEHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VKYHPVFSAKIEQRLIERFGVKRALVALDQPNEEAQRLQVSGLVSNYLTSTLKNGMVVTV
EEECCCHHHHHHHHHHHHHCHHHEEHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GQGRNVSSVAHHIGVITPRDCKFVCGIGGIHPRGGMYNADHVCRQFAKKYGGTSETLYAP
CCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
AYAENREQKVAFMQNATVKQTLDLARKADVALVGIGDMSENSYMVDLGWFTPDEVVQSRL
HHHCCCHHHHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
MQGVVGDFAGYDFFDIHGDVANTVMSDRVIGLGIEEFRPIAEVIAIAAENSKPLALLGAL
HHHHHHHHCCCCEEECCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEHHH
RTGAIDVIATSVSNALTVLNLDEQMHGKSTSEV
HHCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA