| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156977330
Identifier: 156977330
GI number: 156977330
Start: 1278382
End: 1278891
Strand: Direct
Name: 156977330
Synonym: VIBHAR_06116
Alternate gene names: NA
Gene position: 1278382-1278891 (Clockwise)
Preceding gene: 156977329
Following gene: 156977331
Centisome position: 58.0
GC content: 47.84
Gene sequence:
>510_bases GTGGGGATCCCTCAGAACCAAGGCGCCATTTATACCAACGTTGGTGACCTAGATAACCAAGGTATTACTGCTTACTTAGG TTATGCAATTGCTGATGTCTCTGCTCGCTTGAGCTACAACCAATCTCGTCCAGAACTTAACGGTACTCCACTATCAGATG AAGACTCAACGCTGGGCACATCTATCGGCGACACTTGGGCTCTTGACCTCATTTACCAACCAATGGAGTCACTGGAGTTT GGCTGGAATGCTCGATTTGTTGAGCGCCTAACCGATGTAGCGAATCCAACCGTTCACCCAGAAAAGCCAGGCTATGGTGT GCATGATGTTTACGCATATTGGATGCCTATTGCAGACGAAGAGTTATCTCTGACGCTGTCTGTTAAGAATGTATTCGACA AATACTACTTTGACCACGCATCGTACATGGCATACATCGGCAGTCCTGTCGCTCAAGGTTATGCAAGCCCAGGACGAGAC TTCCGCTTTAACGTCACTTACGCGTTCTAG
Upstream 100 bases:
>100_bases GTTGATAGGAAGAGAAGCTTACTCATTTAGCGTGAAGGATCTGGCCTTAGCCGTAGGAGGCCTCAAAGCGATAAGTGCGG CAGAGTTCCGGTGAAAAGAT
Downstream 100 bases:
>100_bases TATTGGTCGACAAAACAGCTTTTTATCGAACAATGCCAACTCAAAAGTCGGAGCGAATTGCTCCGATTTTTGGTATTTAG CGGCGTATTTTGCTTTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NB-Dependent Receptor Domain Protein; Enterobactin Receptor VctA; Outer Membrane Protein; NB Dependent Receptor; NB-Dependent Heme/Hemoglobin Receptor Family Protein; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Haem/Haemoglobin Receptor; Iron-Regulated Outer Membrane Protein B; Iron-Regulated Outer Membrane Protein FetA; Fe-Regulated Protein B; Nb-Dependent Receptor; Ferric Enterobactin Receptor; Enterobactin Receptor; CirA Protein; Fe Transport Outer Membrane Receptor Protein
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MGIPQNQGAIYTNVGDLDNQGITAYLGYAIADVSARLSYNQSRPELNGTPLSDEDSTLGTSIGDTWALDLIYQPMESLEF GWNARFVERLTDVANPTVHPEKPGYGVHDVYAYWMPIADEELSLTLSVKNVFDKYYFDHASYMAYIGSPVAQGYASPGRD FRFNVTYAF
Sequences:
>Translated_169_residues MGIPQNQGAIYTNVGDLDNQGITAYLGYAIADVSARLSYNQSRPELNGTPLSDEDSTLGTSIGDTWALDLIYQPMESLEF GWNARFVERLTDVANPTVHPEKPGYGVHDVYAYWMPIADEELSLTLSVKNVFDKYYFDHASYMAYIGSPVAQGYASPGRD FRFNVTYAF >Mature_168_residues GIPQNQGAIYTNVGDLDNQGITAYLGYAIADVSARLSYNQSRPELNGTPLSDEDSTLGTSIGDTWALDLIYQPMESLEFG WNARFVERLTDVANPTVHPEKPGYGVHDVYAYWMPIADEELSLTLSVKNVFDKYYFDHASYMAYIGSPVAQGYASPGRDF RFNVTYAF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18833; Mature: 18702
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIPQNQGAIYTNVGDLDNQGITAYLGYAIADVSARLSYNQSRPELNGTPLSDEDSTLGT CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SIGDTWALDLIYQPMESLEFGWNARFVERLTDVANPTVHPEKPGYGVHDVYAYWMPIADE CCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCCC ELSLTLSVKNVFDKYYFDHASYMAYIGSPVAQGYASPGRDFRFNVTYAF CEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEEEC >Mature Secondary Structure GIPQNQGAIYTNVGDLDNQGITAYLGYAIADVSARLSYNQSRPELNGTPLSDEDSTLGT CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SIGDTWALDLIYQPMESLEFGWNARFVERLTDVANPTVHPEKPGYGVHDVYAYWMPIADE CCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCCC ELSLTLSVKNVFDKYYFDHASYMAYIGSPVAQGYASPGRDFRFNVTYAF CEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA