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The map label for this gene is atpH2

Identifier: 156977321

GI number: 156977321

Start: 1270030

End: 1270572

Strand: Reverse

Name: atpH2

Synonym: VIBHAR_06107

Alternate gene names: 156977321

Gene position: 1270572-1270030 (Counterclockwise)

Preceding gene: 156977322

Following gene: 156977320

Centisome position: 57.65

GC content: 45.86

Gene sequence:

>543_bases
ATGTCCGAATTGACAGTGGTAGCTCAACCCTACGCAAAAGCGGCGTTTGATTACGCACGCGACGTAGAATGCTTGGACGA
TTGGCAACAAATGTTTGCGATTACCCAAGTGGTCTTGGAACAACCTAACACACTTCTGGTCTTGAATGACCTTGATGAAG
ACGGTTCTGAACAACCATTGTTGGATCTGATTCTTCATGCTGGTGGTGAATGGTTGAATAAAAACTTCGAGAATTTTCTT
CGCATTATGGAAGAGAACAAGCGCCTAAAAGCGCTCAGTGAAGTAAATGTTCAGTTCCAAGAGATGAAAGCGGATTACGA
ACGAACCATGACAGTAACAGTGCGTGTTTCAGAACCTCTGGATGAGGAACAGATGGCAAGGCTTAAACAAGCGTTAACCG
AAAAATACGGTAAAGCCATCACACTAGAAACACAACTGGATCCATCCCTTGTAGGTGGTGTGGTGATCACAGCAGGGCAG
ACCGTGTATGACGGCAGTGTCCTCACCAACCTAAGCCGATTGGCGACCAACCTACATGTGTAA

Upstream 100 bases:

>100_bases
TGGTGATTGAAAGTGCCAGCAAGCTGATTAATCGCAATCTGGATAGCTCGGCTAACCGCGACTTGGTGAACCGCTTCATC
AACGAAATGTAGGAGGGCAC

Downstream 100 bases:

>100_bases
CGGGGTATAGAAATGCAATTAAATTCAAATGAAATCAGTGAATTAATCAGAGAGCGAATTGTTAACTTCAACCTCGAAAG
TGAAGCGAGAAATGAAGGTA

Product: ATP synthase F1, delta subunit

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta 2; F-type ATPase subunit delta 2; F-ATPase subunit delta 2

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSELTVVAQPYAKAAFDYARDVECLDDWQQMFAITQVVLEQPNTLLVLNDLDEDGSEQPLLDLILHAGGEWLNKNFENFL
RIMEENKRLKALSEVNVQFQEMKADYERTMTVTVRVSEPLDEEQMARLKQALTEKYGKAITLETQLDPSLVGGVVITAGQ
TVYDGSVLTNLSRLATNLHV

Sequences:

>Translated_180_residues
MSELTVVAQPYAKAAFDYARDVECLDDWQQMFAITQVVLEQPNTLLVLNDLDEDGSEQPLLDLILHAGGEWLNKNFENFL
RIMEENKRLKALSEVNVQFQEMKADYERTMTVTVRVSEPLDEEQMARLKQALTEKYGKAITLETQLDPSLVGGVVITAGQ
TVYDGSVLTNLSRLATNLHV
>Mature_179_residues
SELTVVAQPYAKAAFDYARDVECLDDWQQMFAITQVVLEQPNTLLVLNDLDEDGSEQPLLDLILHAGGEWLNKNFENFLR
IMEENKRLKALSEVNVQFQEMKADYERTMTVTVRVSEPLDEEQMARLKQALTEKYGKAITLETQLDPSLVGGVVITAGQT
VYDGSVLTNLSRLATNLHV

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=181, Percent_Identity=37.0165745856354, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD2_VIBHB (A7N6Q7)

Other databases:

- EMBL:   CP000790
- RefSeq:   YP_001448227.1
- ProteinModelPortal:   A7N6Q7
- SMR:   A7N6Q7
- STRING:   A7N6Q7
- GeneID:   5557000
- GenomeReviews:   CP000790_GR
- KEGG:   vha:VIBHAR_06107
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   AQPYAKA
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20307; Mature: 20176

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELTVVAQPYAKAAFDYARDVECLDDWQQMFAITQVVLEQPNTLLVLNDLDEDGSEQPL
CCCCEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
LDLILHAGGEWLNKNFENFLRIMEENKRLKALSEVNVQFQEMKADYERTMTVTVRVSEPL
HHHHHHCCCHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC
DEEQMARLKQALTEKYGKAITLETQLDPSLVGGVVITAGQTVYDGSVLTNLSRLATNLHV
CHHHHHHHHHHHHHHHCCEEEEECCCCHHHHCCEEEECCCEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SELTVVAQPYAKAAFDYARDVECLDDWQQMFAITQVVLEQPNTLLVLNDLDEDGSEQPL
CCCEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
LDLILHAGGEWLNKNFENFLRIMEENKRLKALSEVNVQFQEMKADYERTMTVTVRVSEPL
HHHHHHCCCHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC
DEEQMARLKQALTEKYGKAITLETQLDPSLVGGVVITAGQTVYDGSVLTNLSRLATNLHV
CHHHHHHHHHHHHHHHCCEEEEECCCCHHHHCCEEEECCCEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA