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The map label for this gene is yjcL [H]

Identifier: 156977235

GI number: 156977235

Start: 1205639

End: 1206985

Strand: Reverse

Name: yjcL [H]

Synonym: VIBHAR_06021

Alternate gene names: 156977235

Gene position: 1206985-1205639 (Counterclockwise)

Preceding gene: 156977238

Following gene: 156977234

Centisome position: 54.76

GC content: 45.81

Gene sequence:

>1347_bases
ATGTTGCAAGGATATTTCAAAGTGTTTCTGCTGTTACATATTGTAACATTAATGCGTTATCTGTATGGTTCACCCTCTCA
AAAAGTAGACATTCACGCTCAAATTAAAGGAAGAACTATAATGATTTCTAATGATGCAGTAATCATGGGCATGTTAGCGG
TGATACTTGGCGGTATCTTCATTACGGAAAGCAGCCAAAACAGCGCACTAAAAAAATTCTATTCGATTATTCCTGGTCTT
TTGCTTTGCTACTTTGTTCCGTCACTACTAAACAGTTTCGGTATTATTGATGCGTCAAACTCTAAGCTGTACTTCGTAGC
AAGCCGTTACTTGTTGCCAAGTGCGCTGGTACTTTTGATCATTTCTGCTGACCTTCGCAAAATCATTGGCCTTGGCCCGA
AAGCCGTCATCATGTTCTTAACCGGCACGGCGGGTATCATCATCGGTGGTCCATTGGCGATTCTTATTATCGACCAAGTC
TCTCCGGATCTTGTGTCTGGCGATGTTTGGCGCGGTCTAACCACAGTCGCAGGCTCTTGGATTGGCGGTGGTGCTAACCA
AGCAGCGATGAAAGAAGTATTCGAAGTGAACGACCAGCTATTCTCGGCGATGATCACTGTGGACGTTATCTGTGCCAACG
TCTGGATGGCAATCTTGCTGATCATGGTTGGTCGTCAAAAGAAAGTCGACGCTTGGCTAAAAGCAGACACATCATCTATT
GAGGAACTGAAAGAAACCGTTTCTAAGTATCAAGAAGAAAACGACCGTCCAACGACAACAACAGATTTGGTTAAAATTGC
CGCGATTGCGTTTGGTTTAACGGGGCTGGCTCATTACTTCAGTGATATGATTGCGCCTTGGATTTCAACTAATGCCCCAG
AACTGGCGAAATACAGCCTAACGTCAGGCTTCTTCTGGTTGATCGTATTGGTAACGACTTTTGCGCTGATTGCTTCTTGT
TTTAAATCAACACGTAGCCTTGAGCATGGCGGTGCATCTAAAATCGGTTCAACCTTTATCTACATCCTTGTTGCGACCAT
TGGTATGCAAATGGACGTGACTGCAATCTTCGATAACCCAGGTTACTTCTTTATCGGCATCGTATGGCTAACTATCCATG
CTGTACTGATGATTGCTGTTGCGAAACTCATTCGTGCGCCGCTGTTCTTTATGGCTGTAGGTAGCCAAGCGAACGTTGGC
GGTGCGGCATCTGCTCCGGTTGTTGCGGCGGCATTCCACCCAGCACTTGCGCCAGTGGGCATTCTAATGGCCGTGCTAGG
TTATGCACTTGGCACATACGGTGCTTACATTAGCGGTCTATTGATGCAGTTGGCGGCAGGGCAATAA

Upstream 100 bases:

>100_bases
AACCACGAAACATAGGAAGGCGATAATGAGGAAATTTTTTGAGTTAAATGAAAATAACGCAATCGCTATATAAATAAAGG
GGTTGTGAGCAATTGTTGTG

Downstream 100 bases:

>100_bases
TCCTGTAGTGCTTTTCACAGCACATTGAGAACAGAAGCATTTTGGGAACGAAAGGTACATTAGTTACAAAAGTACATTAG
ACGCCAAAGTGCATTGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MLQGYFKVFLLLHIVTLMRYLYGSPSQKVDIHAQIKGRTIMISNDAVIMGMLAVILGGIFITESSQNSALKKFYSIIPGL
LLCYFVPSLLNSFGIIDASNSKLYFVASRYLLPSALVLLIISADLRKIIGLGPKAVIMFLTGTAGIIIGGPLAILIIDQV
SPDLVSGDVWRGLTTVAGSWIGGGANQAAMKEVFEVNDQLFSAMITVDVICANVWMAILLIMVGRQKKVDAWLKADTSSI
EELKETVSKYQEENDRPTTTTDLVKIAAIAFGLTGLAHYFSDMIAPWISTNAPELAKYSLTSGFFWLIVLVTTFALIASC
FKSTRSLEHGGASKIGSTFIYILVATIGMQMDVTAIFDNPGYFFIGIVWLTIHAVLMIAVAKLIRAPLFFMAVGSQANVG
GAASAPVVAAAFHPALAPVGILMAVLGYALGTYGAYISGLLMQLAAGQ

Sequences:

>Translated_448_residues
MLQGYFKVFLLLHIVTLMRYLYGSPSQKVDIHAQIKGRTIMISNDAVIMGMLAVILGGIFITESSQNSALKKFYSIIPGL
LLCYFVPSLLNSFGIIDASNSKLYFVASRYLLPSALVLLIISADLRKIIGLGPKAVIMFLTGTAGIIIGGPLAILIIDQV
SPDLVSGDVWRGLTTVAGSWIGGGANQAAMKEVFEVNDQLFSAMITVDVICANVWMAILLIMVGRQKKVDAWLKADTSSI
EELKETVSKYQEENDRPTTTTDLVKIAAIAFGLTGLAHYFSDMIAPWISTNAPELAKYSLTSGFFWLIVLVTTFALIASC
FKSTRSLEHGGASKIGSTFIYILVATIGMQMDVTAIFDNPGYFFIGIVWLTIHAVLMIAVAKLIRAPLFFMAVGSQANVG
GAASAPVVAAAFHPALAPVGILMAVLGYALGTYGAYISGLLMQLAAGQ
>Mature_448_residues
MLQGYFKVFLLLHIVTLMRYLYGSPSQKVDIHAQIKGRTIMISNDAVIMGMLAVILGGIFITESSQNSALKKFYSIIPGL
LLCYFVPSLLNSFGIIDASNSKLYFVASRYLLPSALVLLIISADLRKIIGLGPKAVIMFLTGTAGIIIGGPLAILIIDQV
SPDLVSGDVWRGLTTVAGSWIGGGANQAAMKEVFEVNDQLFSAMITVDVICANVWMAILLIMVGRQKKVDAWLKADTSSI
EELKETVSKYQEENDRPTTTTDLVKIAAIAFGLTGLAHYFSDMIAPWISTNAPELAKYSLTSGFFWLIVLVTTFALIASC
FKSTRSLEHGGASKIGSTFIYILVATIGMQMDVTAIFDNPGYFFIGIVWLTIHAVLMIAVAKLIRAPLFFMAVGSQANVG
GAASAPVVAAAFHPALAPVGILMAVLGYALGTYGAYISGLLMQLAAGQ

Specific function: Unknown

COG id: COG5505

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008537 [H]

Pfam domain/function: PF05684 DUF819 [H]

EC number: NA

Molecular weight: Translated: 48019; Mature: 48019

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQGYFKVFLLLHIVTLMRYLYGSPSQKVDIHAQIKGRTIMISNDAVIMGMLAVILGGIF
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHHCCCE
ITESSQNSALKKFYSIIPGLLLCYFVPSLLNSFGIIDASNSKLYFVASRYLLPSALVLLI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEHHHHHHHHHHHHH
ISADLRKIIGLGPKAVIMFLTGTAGIIIGGPLAILIIDQVSPDLVSGDVWRGLTTVAGSW
HHHHHHHHHCCCHHHEEEEEECCCCEEECCCEEEEEEECCCCCHHCCHHHHHHHHHHCCC
IGGGANQAAMKEVFEVNDQLFSAMITVDVICANVWMAILLIMVGRQKKVDAWLKADTSSI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
EELKETVSKYQEENDRPTTTTDLVKIAAIAFGLTGLAHYFSDMIAPWISTNAPELAKYSL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TSGFFWLIVLVTTFALIASCFKSTRSLEHGGASKIGSTFIYILVATIGMQMDVTAIFDNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC
GYFFIGIVWLTIHAVLMIAVAKLIRAPLFFMAVGSQANVGGAASAPVVAAAFHPALAPVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHH
ILMAVLGYALGTYGAYISGLLMQLAAGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQGYFKVFLLLHIVTLMRYLYGSPSQKVDIHAQIKGRTIMISNDAVIMGMLAVILGGIF
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHHCCCE
ITESSQNSALKKFYSIIPGLLLCYFVPSLLNSFGIIDASNSKLYFVASRYLLPSALVLLI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEHHHHHHHHHHHHH
ISADLRKIIGLGPKAVIMFLTGTAGIIIGGPLAILIIDQVSPDLVSGDVWRGLTTVAGSW
HHHHHHHHHCCCHHHEEEEEECCCCEEECCCEEEEEEECCCCCHHCCHHHHHHHHHHCCC
IGGGANQAAMKEVFEVNDQLFSAMITVDVICANVWMAILLIMVGRQKKVDAWLKADTSSI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
EELKETVSKYQEENDRPTTTTDLVKIAAIAFGLTGLAHYFSDMIAPWISTNAPELAKYSL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TSGFFWLIVLVTTFALIASCFKSTRSLEHGGASKIGSTFIYILVATIGMQMDVTAIFDNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC
GYFFIGIVWLTIHAVLMIAVAKLIRAPLFFMAVGSQANVGGAASAPVVAAAFHPALAPVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHH
ILMAVLGYALGTYGAYISGLLMQLAAGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]