Click here to switch to the map view.

The map label for this gene is yfmD [H]

Identifier: 156977222

GI number: 156977222

Start: 1194028

End: 1195044

Strand: Direct

Name: yfmD [H]

Synonym: VIBHAR_06008

Alternate gene names: 156977222

Gene position: 1194028-1195044 (Clockwise)

Preceding gene: 156977221

Following gene: 156977223

Centisome position: 54.18

GC content: 46.61

Gene sequence:

>1017_bases
ATGTCTTTTATTAATGTCATGCAAAGTAGAAAAGCGCTATTTGGCTGTTTCGTTGTTTTTTTAGCACTCAGTTTGGGGAC
GGTTGCATCTATGATCAGCTACTCCTCTTTTGAGCTTAAGATCCACGACTTATTGGGGTTCTGGTTTAGCTTTGATGAAG
CAAATATAAAACATCAGATTCTCTCATCGTTGAGAGCCCCCCGTGTACTGGCCTCTATCCTGATTGGTATCAATCTCGCG
ATTGCTGGGCTTCTTATGCAAGGGTTAACAGCCAATCCACTGGCGTCTCCAAGCATTTTGGGGATAAACGCCGGGGCATC
TTGTTTTATCGCTATCTCTTCCATGAATTTGGTTTTCTTGCCTGAATTACCACTTTCCGTTAATGCATTGCTTGGTGGCG
CGGTAAGCGGACTGCTCGTACTTTCTTTAGGTGGTTTCTTTGCTGGTAAGTCACATCCAATTAAGTTGGTATTGGCCGGC
ATTGCCGTTAACGCCCTGTTAGTTGGTATTACTAGAAGTGCATTAATCCTAGCCGATGATATGGCCTATAGCGTTTTGAA
CTGGCTGGCTGGGTCGATCGCGAACATCACTTGGGAAGACTGGGCACAATTTTGGCCTGTGAGCTTGGTTGGAATCGTTT
TGACCATATCACTTGCTCGTAATCTTAACTTGCTGACTCTTGGCGACGATATTGCGACCGGACTTGGTGTGAACCTCAAC
CGTACACGTGTTATTGCTTGTATTTCCGTGCTGTTGCTAACCACATCGAGTGTCGCTATCGCGGGACCTATCGCTTTTGT
TGGCCTACTTGTTACTCATATCGCCCGTAAGCTTGTTGGCACCAATCACTTTATTTTGCTGCCTGTCACCGCGATGCTTG
GCGCAAGCCTTTTGGTGTGGTCTGACGTTATTTCACGCATGGTCGCGTTCCCAGCAGAAACGCCAGTCGGGGTTATTACT
GCATTGATTGGTTCGCCATTCTTCATTGCACTGGCCGTTAGGAGCAAAGTGTCATGA

Upstream 100 bases:

>100_bases
ACAGGTTGTGAATGTTTCGCCACAAGCTTGGTCTCTTAACCGAGGTATGCATGCTGCCGAGCAAATCGCACAAGATCTTT
CTGAATTACTAAACAAATAG

Downstream 100 bases:

>100_bases
ACAAAACAAAAGCAATTACGTTAACCATTTTATTAATTGCTTGTGCGATAGGCAGCTTATTCGTCGGTAGTGTCTCCCTT
TCCTTAAGTGACGTGGTAAC

Product: hypothetical protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate import system permease protein [H]

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSFINVMQSRKALFGCFVVFLALSLGTVASMISYSSFELKIHDLLGFWFSFDEANIKHQILSSLRAPRVLASILIGINLA
IAGLLMQGLTANPLASPSILGINAGASCFIAISSMNLVFLPELPLSVNALLGGAVSGLLVLSLGGFFAGKSHPIKLVLAG
IAVNALLVGITRSALILADDMAYSVLNWLAGSIANITWEDWAQFWPVSLVGIVLTISLARNLNLLTLGDDIATGLGVNLN
RTRVIACISVLLLTTSSVAIAGPIAFVGLLVTHIARKLVGTNHFILLPVTAMLGASLLVWSDVISRMVAFPAETPVGVIT
ALIGSPFFIALAVRSKVS

Sequences:

>Translated_338_residues
MSFINVMQSRKALFGCFVVFLALSLGTVASMISYSSFELKIHDLLGFWFSFDEANIKHQILSSLRAPRVLASILIGINLA
IAGLLMQGLTANPLASPSILGINAGASCFIAISSMNLVFLPELPLSVNALLGGAVSGLLVLSLGGFFAGKSHPIKLVLAG
IAVNALLVGITRSALILADDMAYSVLNWLAGSIANITWEDWAQFWPVSLVGIVLTISLARNLNLLTLGDDIATGLGVNLN
RTRVIACISVLLLTTSSVAIAGPIAFVGLLVTHIARKLVGTNHFILLPVTAMLGASLLVWSDVISRMVAFPAETPVGVIT
ALIGSPFFIALAVRSKVS
>Mature_337_residues
SFINVMQSRKALFGCFVVFLALSLGTVASMISYSSFELKIHDLLGFWFSFDEANIKHQILSSLRAPRVLASILIGINLAI
AGLLMQGLTANPLASPSILGINAGASCFIAISSMNLVFLPELPLSVNALLGGAVSGLLVLSLGGFFAGKSHPIKLVLAGI
AVNALLVGITRSALILADDMAYSVLNWLAGSIANITWEDWAQFWPVSLVGIVLTISLARNLNLLTLGDDIATGLGVNLNR
TRVIACISVLLLTTSSVAIAGPIAFVGLLVTHIARKLVGTNHFILLPVTAMLGASLLVWSDVISRMVAFPAETPVGVITA
LIGSPFFIALAVRSKVS

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Involved in the translocation of the substrate across the membrane (Probable) [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790741, Length=306, Percent_Identity=42.8104575163399, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1790740, Length=323, Percent_Identity=37.1517027863777, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786805, Length=294, Percent_Identity=38.4353741496599, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786347, Length=278, Percent_Identity=34.1726618705036, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786804, Length=286, Percent_Identity=31.1188811188811, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788004, Length=294, Percent_Identity=33.6734693877551, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35505; Mature: 35374

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFINVMQSRKALFGCFVVFLALSLGTVASMISYSSFELKIHDLLGFWFSFDEANIKHQI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCHHHHH
LSSLRAPRVLASILIGINLAIAGLLMQGLTANPLASPSILGINAGASCFIAISSMNLVFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEE
PELPLSVNALLGGAVSGLLVLSLGGFFAGKSHPIKLVLAGIAVNALLVGITRSALILADD
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHH
MAYSVLNWLAGSIANITWEDWAQFWPVSLVGIVLTISLARNLNLLTLGDDIATGLGVNLN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCC
RTRVIACISVLLLTTSSVAIAGPIAFVGLLVTHIARKLVGTNHFILLPVTAMLGASLLVW
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHH
SDVISRMVAFPAETPVGVITALIGSPFFIALAVRSKVS
HHHHHHHHHCCCCCHHHHHHHHHCCHHHEEHHHHHCCC
>Mature Secondary Structure 
SFINVMQSRKALFGCFVVFLALSLGTVASMISYSSFELKIHDLLGFWFSFDEANIKHQI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCHHHHH
LSSLRAPRVLASILIGINLAIAGLLMQGLTANPLASPSILGINAGASCFIAISSMNLVFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEE
PELPLSVNALLGGAVSGLLVLSLGGFFAGKSHPIKLVLAGIAVNALLVGITRSALILADD
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHH
MAYSVLNWLAGSIANITWEDWAQFWPVSLVGIVLTISLARNLNLLTLGDDIATGLGVNLN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCC
RTRVIACISVLLLTTSSVAIAGPIAFVGLLVTHIARKLVGTNHFILLPVTAMLGASLLVW
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHH
SDVISRMVAFPAETPVGVITALIGSPFFIALAVRSKVS
HHHHHHHHHCCCCCHHHHHHHHHCCHHHEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]