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The map label for this gene is yjcC [H]

Identifier: 156977168

GI number: 156977168

Start: 1141085

End: 1141903

Strand: Direct

Name: yjcC [H]

Synonym: VIBHAR_05954

Alternate gene names: 156977168

Gene position: 1141085-1141903 (Clockwise)

Preceding gene: 156977167

Following gene: 156977170

Centisome position: 51.77

GC content: 45.3

Gene sequence:

>819_bases
ATGGAGTTAAAGAAGCAGTCCGATTACGAGCAGTACATAAGGCAGGACAGCCTTGGCGAATACTACGTTGTAGTCAATCA
ATACACTTTTCACAGTGTTTATCAGCCTATCTTTGATAAACATCAGAAAATGATCGGTATGGAAGCCCTGCTGCGCATTC
GTGGTGCAGATGGTGCCTATATTCGTCCCGATCTTTTCTTTACTGATAGCAGCATTGATACCCACTTTCGACTTTGCGTA
GAGTTCCTATCTCGAGCAATTCACATCCGCAACTTCGCTCGTCACTTTGCGGGCTCGCCGATCAAATTGTTTCTCAACGT
AATGCCCCAAACGTTGTTAACACTTACCAATGATATGGGCTTTAAAGATAACGGATTACTCTATAAGCGATTATCCGAAT
TGGGTATGGCACCTTCTGATGTCGTCTTTGAAGTTGTAGAAGAAGCCTGTGGCGATACAGAGCTTTTGAGCCAAGCCGTA
AAACTTATGCGCGCCAATGGCTTCTTGTTTGCGATTGATGACTTTGGCTCTCACCATTCTGATATGCCACGAGTGAAGCA
GCTTTGCCCTGATATCATCAAGATCGACCGCTCTTACCTACTCGACTATTGCTCTGGTGATACACTCGCGATAGCCAATG
CAGTCGAACTCGCCGATCAGATGAACGCTAAAGTCGTGATTGAAGGCGTAGAAGAAAACGGCCAGCTATCCGCAATGCAG
GCACTGGACTTGGATTACTACCAAGGTTTTTATCTGGCGAAACCAAACTCGATTCACCATTGGACTGAGCAAAAAGCTCC
AGCTAAGGTATTGCATTAA

Upstream 100 bases:

>100_bases
CAAATTAACTCAATAGGCTTCAAAATAAGCCATCGTAGTGCTTCAAATCAGAATTCCATCCTGTTACAGTCCTCCGTATG
CTACTATCTTGGCGTTTTTC

Downstream 100 bases:

>100_bases
AAGCGATAACACAGAGACGAACTAAATTTTTTTAGATACAAAAGCGCCGCCTAGGTTACTCACCAAGGCGGCGCTTTTCT
GTTTATGTCGATTCTGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MELKKQSDYEQYIRQDSLGEYYVVVNQYTFHSVYQPIFDKHQKMIGMEALLRIRGADGAYIRPDLFFTDSSIDTHFRLCV
EFLSRAIHIRNFARHFAGSPIKLFLNVMPQTLLTLTNDMGFKDNGLLYKRLSELGMAPSDVVFEVVEEACGDTELLSQAV
KLMRANGFLFAIDDFGSHHSDMPRVKQLCPDIIKIDRSYLLDYCSGDTLAIANAVELADQMNAKVVIEGVEENGQLSAMQ
ALDLDYYQGFYLAKPNSIHHWTEQKAPAKVLH

Sequences:

>Translated_272_residues
MELKKQSDYEQYIRQDSLGEYYVVVNQYTFHSVYQPIFDKHQKMIGMEALLRIRGADGAYIRPDLFFTDSSIDTHFRLCV
EFLSRAIHIRNFARHFAGSPIKLFLNVMPQTLLTLTNDMGFKDNGLLYKRLSELGMAPSDVVFEVVEEACGDTELLSQAV
KLMRANGFLFAIDDFGSHHSDMPRVKQLCPDIIKIDRSYLLDYCSGDTLAIANAVELADQMNAKVVIEGVEENGQLSAMQ
ALDLDYYQGFYLAKPNSIHHWTEQKAPAKVLH
>Mature_272_residues
MELKKQSDYEQYIRQDSLGEYYVVVNQYTFHSVYQPIFDKHQKMIGMEALLRIRGADGAYIRPDLFFTDSSIDTHFRLCV
EFLSRAIHIRNFARHFAGSPIKLFLNVMPQTLLTLTNDMGFKDNGLLYKRLSELGMAPSDVVFEVVEEACGDTELLSQAV
KLMRANGFLFAIDDFGSHHSDMPRVKQLCPDIIKIDRSYLLDYCSGDTLAIANAVELADQMNAKVVIEGVEENGQLSAMQ
ALDLDYYQGFYLAKPNSIHHWTEQKAPAKVLH

Specific function: Overexpression reduces biofilm formation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=260, Percent_Identity=30, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=234, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=25.6916996047431, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 31003; Mature: 31003

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKKQSDYEQYIRQDSLGEYYVVVNQYTFHSVYQPIFDKHQKMIGMEALLRIRGADGAY
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
IRPDLFFTDSSIDTHFRLCVEFLSRAIHIRNFARHFAGSPIKLFLNVMPQTLLTLTNDMG
ECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
FKDNGLLYKRLSELGMAPSDVVFEVVEEACGDTELLSQAVKLMRANGFLFAIDDFGSHHS
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
DMPRVKQLCPDIIKIDRSYLLDYCSGDTLAIANAVELADQMNAKVVIEGVEENGQLSAMQ
CCHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH
ALDLDYYQGFYLAKPNSIHHWTEQKAPAKVLH
HHHHHHHCCEEEECCCCCCHHHHCCCCHHCCC
>Mature Secondary Structure
MELKKQSDYEQYIRQDSLGEYYVVVNQYTFHSVYQPIFDKHQKMIGMEALLRIRGADGAY
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
IRPDLFFTDSSIDTHFRLCVEFLSRAIHIRNFARHFAGSPIKLFLNVMPQTLLTLTNDMG
ECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
FKDNGLLYKRLSELGMAPSDVVFEVVEEACGDTELLSQAVKLMRANGFLFAIDDFGSHHS
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
DMPRVKQLCPDIIKIDRSYLLDYCSGDTLAIANAVELADQMNAKVVIEGVEENGQLSAMQ
CCHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH
ALDLDYYQGFYLAKPNSIHHWTEQKAPAKVLH
HHHHHHHCCEEEECCCCCCHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]