Click here to switch to the map view.

The map label for this gene is clpV1 [H]

Identifier: 156977087

GI number: 156977087

Start: 1062364

End: 1065048

Strand: Direct

Name: clpV1 [H]

Synonym: VIBHAR_05872

Alternate gene names: 156977087

Gene position: 1062364-1065048 (Clockwise)

Preceding gene: 156977073

Following gene: 156977088

Centisome position: 48.2

GC content: 47.71

Gene sequence:

>2685_bases
ATGGCTATGATAAATATAAACCTTTCTTCATTAATTCAGCGTCTACACCCGATTGCAAAAGTGGCATTAGAAGACGCGGC
TGCACTTGCAGTCTCTGAAAAAGCAAACGAAGTTCAAATTGAGCATTATTTACTGAGTCTTTTAGAAAGGCCAAATAGTG
ATTTTGACGTCTTATTAAGTCATTTTGATTGTTCTGAGAACTTATTAAGACAATCGGTTCGATCCACACTCGATACCAAC
GCCAAAGGAAATGGCAGCAAACCTGTTTTTTCTGCTTTATTAATCGAATGGTTACAAGAAAGCTGGCTGGTTTCTTCTTT
AGATCTATCCGAAACACAAATCCGCTCTGGCGCCCTACTCCTTACTCTTGTTAGCAACCCTCTACGTTACGGCCAAAATG
GTTACGCCTCTATCCTTGAAGCGGTAAACCCTGACAGCCTTAAGCGTAACTTTGCAGAGCTAACAAGCCACTCTATTGAG
GCGCAAGTCGCGACTTCCGAAAAAACACAAGCTCGCGAAGATGGCTCGGCATTGAGCAAGTTCACGACAGACTTCACTGG
TAAAGCACGCAAAGGCGAAATCGATCCTGTTTTCTGCCGCGACCAAGAAATCCGCCAAATCGTGGACATTCTTGCTCGTC
GCCGTAAAAACAACCCTATCGCTGTCGGTGAGCCGGGCGTTGGTAAAACCGCAGTCGTAGAAGGCTTGGCGCTAAAAATC
GTACAAGGCGACGTACCAGACAACCTTAAAGGTGTTGAGCTTTATGGTCTGGACATGGGTCTTCTACAAGCAGGTGCAAG
CGTAAAAGGTGAATTCGAAAAACGCCTAAACGCAGTATTGGATGAAGTGAAAAACTCGCCAACGCCAATCATCCTATTCA
TCGATGAAGCACACACTCTAGTCGGCGGCGGTAACCAAGCGGGCGGCAGTGATGCAGCCAACTTGTTAAAACCTGCCCTA
GCACGTGGCGAAGTGAAAACAATTGCTGCAACAACCTGGTCGGAATACAAAAAGTACTTCGAGAAAGATCCAGCGCTTGC
ACGTCGCTTCCAGCTGGTAAAACTTGATGAGCCTTCTCCAGAGCAAGCGGCATTGATCATTCGTGGTCTGCGCCCAGCTT
ACGAGAAGTCACACAATGTATACGTACGCGATGACGCGATCACCGCAGCTGCAGCGCTTTCTGCTCGTTACATCTCTGGC
CGTCAACTACCAGACAAAGCGATCGATGTACTAGATACGGCATGTGCGCGAGTGAACATCAGCCTTAATGCTATCCCTGC
TTCTGTAGAAACACTTCAGCAAGAACTTGCTGCCCAACAGCGCGAGCTTGAAGCACTTGAGCGTGATGCTCTGCAGCAAA
CTGGTGACAAGCACAGCCTTGCTAACATTCCGGACCTAAAACTGGCAATGGAAACAACCAAAGAAGAGTTAGCAGAGCAA
GAAGAGCAATGGCACAAAGAAAAAGAGCAGATCCAAGAGATGATTGCTCTACGTTCTCGCCTGCATGAACTGGTCTTTGG
CGAAGCAAATGAAGAAGAGCTTGCTGCAGACGAAGATTCAGAACAAGATCAAGACGTTTCTCCATACGCAGAAATGGATG
AAGAAGCGGTTCGCATTGCAATTTCAGCCTGCCAAGAACAGCTAGACGCAATCCGCAATGGCAACCCACTGGTTCATTTT
GAAGTTGGCCCAGATGAAGTCAGCCACGTGATCTCGGACTGGACCGGTATTCCAATGGGTAAGATGCTTCAAGACGAAGC
AGAGACCACGCTAAAACTGAAAGAAAGCCTAACACAAAGCATCAAAGGCCAAGAATACGCTATCGATGCACTGTCTGAAG
GCATTCAAACGGCGAAAGCTGGCCTAGGTAACCCAGACGCACCAACAGGCGTATTCCTGCTGGTTGGCCCAAGTGGCGTG
GGTAAAACTGAAACGGCTCGTGCGATCGCTGATCAAATGTTTGGTGGCGAGCGCTTTATGACGACCATCAACATGTCTGA
GTTCCAAGAGAAGCACACGGTATCTCGCCTAATTGGTTCACCTCCGGGTTACGTAGGTTACGGTGAAGGCGGCATGCTGA
CAGAAGCGGTACGTCAACGCCCATATTCAGTTGTACTGCTAGATGAAGTTGAAAAAGCCGACCCAGAAGTGTTGAACCTG
TTCTACCAAGTGTTCGACAAAGGTACGTTAAACGACGGCGAAGGCCGCACCATCGACTTCAAGAATACGCTGATCATCAT
GACCAGCAACCTTGCGACGCACGAGATTGAATCTTTGGTTCATCAATCAAAAGACATCGATGCAAACATCATCGCAGAAG
CTATCCGCCCTACTTTGAACCAACACTTCAAACCGGCGCTGTTGGCACGTATGTCGGTACTACCATTTGTTCCGCTGTCT
GATGAAGCAATGACAGAAATCATTCACCATAAGCTGAACAAAGTCTCTCAGCGTCTACAGAGCCATCACAAATTGTCTCT
GAGCTACGAAGAAAGCTTGGTTGAATTCGTACTGGGTAACTGTCGCCTTGCTGAAACAGGCGCACGTAACATTGACGCGG
TTATCAACCGTCAGTTACTGCCGCAGCTATCGACACAGCTATTGGTGCATGATAAGGATGATTCACATACGCAAATCGCA
GTTTCTGTCGATGAGCAAGGAACACTAACCTATGCGTTCAGCTAA

Upstream 100 bases:

>100_bases
TAAAATCACCAACAAACGATAGTCAAAATATCTTGATAAAAAAAAGAGCGTTATCACTTTTAGTATAATAGTGACCACCT
CTTTTCCTCTAAAGAATAAA

Downstream 100 bases:

>100_bases
TCATAGCGAACTTAGCAACGCCCTACTCGCGATCAGCCAATCTTTGGCTGATCGCAGCCAGCTGACCCAAACGTTAGATG
CCGTGTTGACTGCGGCGAGA

Product: ClpA/B type protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 894; Mature: 893

Protein sequence:

>894_residues
MAMININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTN
AKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQNGYASILEAVNPDSLKRNFAELTSHSIE
AQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKI
VQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPAL
ARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISG
RQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQ
EEQWHKEKEQIQEMIALRSRLHELVFGEANEEELAADEDSEQDQDVSPYAEMDEEAVRIAISACQEQLDAIRNGNPLVHF
EVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGV
GKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNL
FYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLS
DEAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQIA
VSVDEQGTLTYAFS

Sequences:

>Translated_894_residues
MAMININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTN
AKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQNGYASILEAVNPDSLKRNFAELTSHSIE
AQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKI
VQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPAL
ARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISG
RQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQ
EEQWHKEKEQIQEMIALRSRLHELVFGEANEEELAADEDSEQDQDVSPYAEMDEEAVRIAISACQEQLDAIRNGNPLVHF
EVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGV
GKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNL
FYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLS
DEAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQIA
VSVDEQGTLTYAFS
>Mature_893_residues
AMININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNA
KGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQNGYASILEAVNPDSLKRNFAELTSHSIEA
QVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIV
QGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALA
RGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGR
QLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQE
EQWHKEKEQIQEMIALRSRLHELVFGEANEEELAADEDSEQDQDVSPYAEMDEEAVRIAISACQEQLDAIRNGNPLVHFE
VGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVG
KTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLF
YQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSD
EAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQIAV
SVDEQGTLTYAFS

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=299, Percent_Identity=36.1204013377926, Blast_Score=183, Evalue=7e-46,
Organism=Escherichia coli, GI1788943, Length=868, Percent_Identity=38.0184331797235, Blast_Score=543, Evalue=1e-155,
Organism=Escherichia coli, GI1787109, Length=290, Percent_Identity=45.1724137931035, Blast_Score=252, Evalue=8e-68,
Organism=Saccharomyces cerevisiae, GI6323002, Length=709, Percent_Identity=38.3638928067701, Blast_Score=478, Evalue=1e-135,
Organism=Saccharomyces cerevisiae, GI6320464, Length=697, Percent_Identity=38.1635581061693, Blast_Score=463, Evalue=1e-131,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 98208; Mature: 98077

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLS
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHH
HFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALL
HCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
LTLVSNPLRYGQNGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSK
EEEHHCHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH
FTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKI
HHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHEEE
VQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTL
EECCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE
VGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSP
ECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCC
EQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNI
HHHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEE
SLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
EEQWHKEKEQIQEMIALRSRLHELVFGEANEEELAADEDSEQDQDVSPYAEMDEEAVRIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ISACQEQLDAIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQS
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFM
HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHE
TTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNL
EEECHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHH
FYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLN
HHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGN
HCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQIAVSVDEQGTLTYAFS
CEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCCCEEEEEC
>Mature Secondary Structure 
AMININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLS
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHH
HFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALL
HCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
LTLVSNPLRYGQNGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSK
EEEHHCHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH
FTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKI
HHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHEEE
VQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTL
EECCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE
VGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSP
ECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCC
EQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNI
HHHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEE
SLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMETTKEELAEQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
EEQWHKEKEQIQEMIALRSRLHELVFGEANEEELAADEDSEQDQDVSPYAEMDEEAVRIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ISACQEQLDAIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQS
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFM
HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHE
TTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNL
EEECHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHH
FYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLN
HHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLQSHHKLSLSYEESLVEFVLGN
HCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQIAVSVDEQGTLTYAFS
CEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]