Click here to switch to the map view.

The map label for this gene is 156977078

Identifier: 156977078

GI number: 156977078

Start: 1051056

End: 1051562

Strand: Reverse

Name: 156977078

Synonym: VIBHAR_05863

Alternate gene names: NA

Gene position: 1051562-1051056 (Counterclockwise)

Preceding gene: 156977079

Following gene: 156977077

Centisome position: 47.71

GC content: 47.73

Gene sequence:

>507_bases
ATGTCACGTGACGGCTCGGTGGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCAACTGGTGATACGCAAGACGA
CGTAGAACTGCCGCTGAGCATGATGGTGGTTGGTGACTTTACTGCACGTGCAGATGAGACGCCTATCGAAGAACGTACTC
CAATCAATATCGACAAAGACAACTTTAACGAAGTGCTAGAAGGCATGTCTCCAAACGTTAAAGTGAACGTTGAAAACCGC
CTTTCTGACGAAGAAGGCGGCCAAATCGGTGTTGATCTAACGTTCCAAAACATGAAGGACTTCTCTCCTGAAGCGATCGC
GAAAAGCGTACCTGAGCTAAACAGCTTGCTTGAGCTTCGCGAAGCGTTGGTTGCACTGAAAGGCCCTCTAGGTAACGTTC
CTGCGTTCCGTAAGAAGATCGCATCGGTTCTTCAAGACGAAGAAGCGAGAAAGAAACTGTTGGATGAACTAAGCATTGGC
GACGACCAAGAAGCGAAAGAAGAGTAA

Upstream 100 bases:

>100_bases
CACTCCATCAGTTATTCAGAAGTAAGGATCTTTTGCCTGAGAAGTATGAAGAGTGGCAAGCAATTTATGACTAATTAAAG
AGTTAAATAAGGAACTAATT

Downstream 100 bases:

>100_bases
GGGATATCATGTCTGCAGAAGCACAAGCTCCAGAACAAGAAGCAGCCTTAGTTGAATCAGGCTCACTTCTGGATAGCATT
CTTAACGAAACTCGTTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Cytoplasmic Protein; Protein ImpB; Conserved Protein; Cytoplasmic Protein SciH; Type VI Secretion Protein VasQ; T6ss S; Type VI Secretion System Protein; Intracellular Growth Locus Subunit A; Type VI Secretion; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSRDGSVAPKERINIRYVPATGDTQDDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGMSPNVKVNVENR
LSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
DDQEAKEE

Sequences:

>Translated_168_residues
MSRDGSVAPKERINIRYVPATGDTQDDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGMSPNVKVNVENR
LSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIG
DDQEAKEE
>Mature_167_residues
SRDGSVAPKERINIRYVPATGDTQDDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGMSPNVKVNVENRL
SDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELREALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGD
DQEAKEE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18568; Mature: 18437

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDGSVAPKERINIRYVPATGDTQDDVELPLSMMVVGDFTARADETPIEERTPINIDKD
CCCCCCCCHHHCCEEEEECCCCCCCCCHHCCCHHEEEECCCCCCCCCCCCCCCCCCCCCC
NFNEVLEGMSPNVKVNVENRLSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELR
CHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
EALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGDDQEAKEE
HHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SRDGSVAPKERINIRYVPATGDTQDDVELPLSMMVVGDFTARADETPIEERTPINIDKD
CCCCCCCHHHCCEEEEECCCCCCCCCHHCCCHHEEEECCCCCCCCCCCCCCCCCCCCCC
NFNEVLEGMSPNVKVNVENRLSDEEGGQIGVDLTFQNMKDFSPEAIAKSVPELNSLLELR
CHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
EALVALKGPLGNVPAFRKKIASVLQDEEARKKLLDELSIGDDQEAKEE
HHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA