Click here to switch to the map view.

The map label for this gene is ygdR [C]

Identifier: 156977034

GI number: 156977034

Start: 1007636

End: 1007845

Strand: Direct

Name: ygdR [C]

Synonym: VIBHAR_05819

Alternate gene names: 156977034

Gene position: 1007636-1007845 (Clockwise)

Preceding gene: 156977033

Following gene: 156977035

Centisome position: 45.72

GC content: 40.48

Gene sequence:

>210_bases
ATGCGCGTATTGACCGTGATTGCCACTGCACTACTTCTTGTTGCTTGCGGCAGCAGCCAATATCTTATGTCTACGGACGA
AGGGAAAATCATCACTTCTTACGGTAAACCAGACTTAAATGAAGATACTGGCATGTACGAATATGAAGATGTAGATGGCA
AAGAAATGAGCATTTCTAAAGACAAAGTCGTACAGATTATTGAACGATAA

Upstream 100 bases:

>100_bases
GGGCTTTTTCGTTTCTACGCTATCAAACCCTCAGTGACTTTCTCTGCTATAGTTAAATCGTTGTCTTTATCTAACTCACT
TGTTTGAAAAGGAAAACTCT

Downstream 100 bases:

>100_bases
AACACTGTGCCCTCTGAAAATCAGTGGGCCTTTCTCATTCATCTGGTATAACTCTCGCCTCAATCAATAATAGTAATCAA
TGCAACTAATTCATCATTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MRVLTVIATALLLVACGSSQYLMSTDEGKIITSYGKPDLNEDTGMYEYEDVDGKEMSISKDKVVQIIER

Sequences:

>Translated_69_residues
MRVLTVIATALLLVACGSSQYLMSTDEGKIITSYGKPDLNEDTGMYEYEDVDGKEMSISKDKVVQIIER
>Mature_69_residues
MRVLTVIATALLLVACGSSQYLMSTDEGKIITSYGKPDLNEDTGMYEYEDVDGKEMSISKDKVVQIIER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789198, Length=67, Percent_Identity=40.2985074626866, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7664; Mature: 7664

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLTVIATALLLVACGSSQYLMSTDEGKIITSYGKPDLNEDTGMYEYEDVDGKEMSISK
CHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEEECCH
DKVVQIIER
HHHHHHHCC
>Mature Secondary Structure
MRVLTVIATALLLVACGSSQYLMSTDEGKIITSYGKPDLNEDTGMYEYEDVDGKEMSISK
CHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEEECCH
DKVVQIIER
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA