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The map label for this gene is ycaD [C]

Identifier: 156976912

GI number: 156976912

Start: 899497

End: 900567

Strand: Reverse

Name: ycaD [C]

Synonym: VIBHAR_05696

Alternate gene names: 156976912

Gene position: 900567-899497 (Counterclockwise)

Preceding gene: 156976914

Following gene: 156976911

Centisome position: 40.86

GC content: 46.5

Gene sequence:

>1071_bases
ATGAGCTTGATCCCTCTTATGCTTGGTGAATACAACATCTCTGCTGATTACGCGAGTTGGTTGGCGAGTGTGTTTTATGG
TGGCCTATTAGTTGGTGCTATTTTCTTTGAGCGTATTGTTCGTAGTGTTGGACACCGTAAAGCGTTTGTTGGCTGTTTGG
CTACCTTCTCACTGACGATCGTTGCCCTTCCACTTATTCCAAATGGCATGGTATGGCTCGCTGCACGTTTCATCGCAGGT
ATGGCGGTTGCTGGCGTATTTGTGATTGTGGAATCATGGTTGATGTCCGGCGATGAGTCTTCTCGCGCAAAACGCTTAAG
CCTTTACATGCTATCTCTATACGGTGGCTCTGCTCTTGGTCAGTTTGGTATTGGTATCCTAGGTGTAAGCGGCGGCGTTC
CTTTTGTTGCGATCACCACTCTTATCCTAATGGCAATTCTGGTTTTGCTTTTTATTGATTGCGAACAGCCAAACAGCCAT
GAATCAACAGCACTATCGTTTAAGCAAATTTCTAAGCTAAGCCACGCAGCCATCATTGGTTGTATTGTTTCTGGTTTAAC
TTTGGGTGCAATCTACGGCCTGATGCCAGTAGAGCTTGCAAACCGTAAGATTAGCCACCAAGACATCGGTACGTTAATGG
CGCTTGTGATCCTTGGCGGTATGCTAGTTCAACCTATGGTTACCACGTTAAACAAATACATGGCTCGTACTGTGTTGATG
GCGTTTTTCTGTATCCTTGGTATTTTTTCTATCGGCCTGACTTTTGTATCTTCATCAGCGGTAGTACTTGCAGCGGCACT
GTTCCTATTGGGCATGGCGACATTTGCACTATACCCAATCGCAATTAACCTGGGTTGTGAAGGATTAGACGAGCGTTTCA
TCGTATCCGCAGCGCAAGTTATGTTGTTCAGTTACAGCGTCGGTTCAGTGGCTGGCCCAGTGGTTGCTGATAAATTCATG
GGTCAAATGCACGGACTGCTGGGTTACTTGTTCGCCGCACTGCTTGCGACTTGTATCTACATGCTAATCGCGGCAACTAA
GTCAAAACACCAAATGGCTGCTGGGCTGTAA

Upstream 100 bases:

>100_bases
GCGCAAAACATTGGAAAACACAGCCATTCCTTCAGTATCACCACGAGTCACAGTTCCTGTCGTAGCACTGTCTCTTTATG
CAGTGGCATCAGGCTATTTG

Downstream 100 bases:

>100_bases
TATCGGCAAAACAAAATACGAAAACGAGGGACTATACCCGTGATCATTGAAGATGCTTGATTTTCTTTAGAATCAGGATC
ATGCTACGCACCATGAAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSLIPLMLGEYNISADYASWLASVFYGGLLVGAIFFERIVRSVGHRKAFVGCLATFSLTIVALPLIPNGMVWLAARFIAG
MAVAGVFVIVESWLMSGDESSRAKRLSLYMLSLYGGSALGQFGIGILGVSGGVPFVAITTLILMAILVLLFIDCEQPNSH
ESTALSFKQISKLSHAAIIGCIVSGLTLGAIYGLMPVELANRKISHQDIGTLMALVILGGMLVQPMVTTLNKYMARTVLM
AFFCILGIFSIGLTFVSSSAVVLAAALFLLGMATFALYPIAINLGCEGLDERFIVSAAQVMLFSYSVGSVAGPVVADKFM
GQMHGLLGYLFAALLATCIYMLIAATKSKHQMAAGL

Sequences:

>Translated_356_residues
MSLIPLMLGEYNISADYASWLASVFYGGLLVGAIFFERIVRSVGHRKAFVGCLATFSLTIVALPLIPNGMVWLAARFIAG
MAVAGVFVIVESWLMSGDESSRAKRLSLYMLSLYGGSALGQFGIGILGVSGGVPFVAITTLILMAILVLLFIDCEQPNSH
ESTALSFKQISKLSHAAIIGCIVSGLTLGAIYGLMPVELANRKISHQDIGTLMALVILGGMLVQPMVTTLNKYMARTVLM
AFFCILGIFSIGLTFVSSSAVVLAAALFLLGMATFALYPIAINLGCEGLDERFIVSAAQVMLFSYSVGSVAGPVVADKFM
GQMHGLLGYLFAALLATCIYMLIAATKSKHQMAAGL
>Mature_355_residues
SLIPLMLGEYNISADYASWLASVFYGGLLVGAIFFERIVRSVGHRKAFVGCLATFSLTIVALPLIPNGMVWLAARFIAGM
AVAGVFVIVESWLMSGDESSRAKRLSLYMLSLYGGSALGQFGIGILGVSGGVPFVAITTLILMAILVLLFIDCEQPNSHE
STALSFKQISKLSHAAIIGCIVSGLTLGAIYGLMPVELANRKISHQDIGTLMALVILGGMLVQPMVTTLNKYMARTVLMA
FFCILGIFSIGLTFVSSSAVVLAAALFLLGMATFALYPIAINLGCEGLDERFIVSAAQVMLFSYSVGSVAGPVVADKFMG
QMHGLLGYLFAALLATCIYMLIAATKSKHQMAAGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=355, Percent_Identity=31.5492957746479, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 37713; Mature: 37582

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIPLMLGEYNISADYASWLASVFYGGLLVGAIFFERIVRSVGHRKAFVGCLATFSLTI
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALPLIPNGMVWLAARFIAGMAVAGVFVIVESWLMSGDESSRAKRLSLYMLSLYGGSALG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
QFGIGILGVSGGVPFVAITTLILMAILVLLFIDCEQPNSHESTALSFKQISKLSHAAIIG
HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
CIVSGLTLGAIYGLMPVELANRKISHQDIGTLMALVILGGMLVQPMVTTLNKYMARTVLM
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFFCILGIFSIGLTFVSSSAVVLAAALFLLGMATFALYPIAINLGCEGLDERFIVSAAQV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLFSYSVGSVAGPVVADKFMGQMHGLLGYLFAALLATCIYMLIAATKSKHQMAAGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure 
SLIPLMLGEYNISADYASWLASVFYGGLLVGAIFFERIVRSVGHRKAFVGCLATFSLTI
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALPLIPNGMVWLAARFIAGMAVAGVFVIVESWLMSGDESSRAKRLSLYMLSLYGGSALG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
QFGIGILGVSGGVPFVAITTLILMAILVLLFIDCEQPNSHESTALSFKQISKLSHAAIIG
HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
CIVSGLTLGAIYGLMPVELANRKISHQDIGTLMALVILGGMLVQPMVTTLNKYMARTVLM
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFFCILGIFSIGLTFVSSSAVVLAAALFLLGMATFALYPIAINLGCEGLDERFIVSAAQV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLFSYSVGSVAGPVVADKFMGQMHGLLGYLFAALLATCIYMLIAATKSKHQMAAGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]