Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 156976827

GI number: 156976827

Start: 804014

End: 805333

Strand: Direct

Name: yebA [H]

Synonym: VIBHAR_05603

Alternate gene names: 156976827

Gene position: 804014-805333 (Clockwise)

Preceding gene: 156976826

Following gene: 156976828

Centisome position: 36.48

GC content: 47.35

Gene sequence:

>1320_bases
ATGAAGTTTGTTCGTTATTCACTCATTGCTGTCGCTGCTACCGCATTCTCCCTCGCAGCTTACCTCACCTATCAAGCAGA
AACGAAACCTGAAGAAATCACCATTAAGGTGACGCCTTATTCTCAGTTAGAGCGCGCTCCAAAGTCTGGCGCTCAATCAA
CGGAGGCGACACAAAAAAATGGCCGCTCCGCTGAAGGTCATGACAACATTGCTCGTATTCATTACTTCGTCAAAGTCGGC
GATACGCTTAGCACCATTTTTTCTTCATGGGGTGTGCCGTACGAAACGACGCAGAAGCTTCTTGAAGCTGACTTAATCTC
ACTTAAGCTCGATACCATTAAACCAGGCGACCACCTCGAGTTTGTGGTGGATAGAGACACTAAAACCTTACAGCAAGTGA
TTTTCCATGAGAGTCTCGTTGAACGCGCGATCTACACGCAAAACAGCGATGGTACTTTTGCGTATGACTTTGTGGAAGAG
CCGGGTGAGTGGCGTGAAGAAATGCACTCAGGGACGATCAACGGTAGCTTCTCATCGTCTGCTCATCGACAAGGCTTAAC
TACGACCCAGATTGCCAACATCACACGTGTATTGCGCGATAAAGTGAATTTTGCTCGCGAACTTCGTGCTGGTGATAGTT
TTCATGTGTTGGTTCGTCGCCAATATGTTGATGATCATTTAACTGGCAATACAGAAGTACAAGGCATTGCAATCAAGATG
CGCGGCAAAGATGTGGAGGCGTTTTTGGCGGAAGATGGACGTTTTTATGACCGAGATGGAAACAGCCTTGAGCAAGCATT
CAATCGTTACCCAGTCGACAAACAGTTCCGTCGTATTACCTCACCTTTCAACCCTTATCGGAAACACCCAGTGACAGGAC
GTATCTCACCACATAATGGCACGGATTTCGCGACGCCTGTTGGCTCTCCAGTCTACTCTACTGGCGATGGTAAAGTGATT
GCGATTCGTAACCATCCTTATGCGGGGAAATACTTGGTGATAGAGCATAACAGTGTCTACAAAACGCGTTATCTGCATTT
GAGCCGTTTCTTAGTTAAGAAAGGAGACCATGTTAAGCGTGGGCAGAAAATTGCGCTTTCCGGAGCGACAGGCCGTCTAA
CAGGCCCACACCTGCACTTCGAAGTACTGGTACGAAATCGCGCGGTCGATTCAATGAAAGCAGACTTACCACTGGCAAGC
TCGATCCCAAGTAAAGACAAGCCTGCATTCTTGGCAAGAATTTCTCAGTTTGATGACATGGTTGCCACAGAGCAAAACGC
TAGCAATGTGGACGCGAAAGAGGAAAAACGAACTTCTTGA

Upstream 100 bases:

>100_bases
AATAAAGCTTAGAAACAAAGTTCTCAAATACGTAATGTTTTCATTGCGATTGTATGATGTTATAACATAACAACCATTGT
TTTCAGTCAATCCAAGTATT

Downstream 100 bases:

>100_bases
GCCTAATCTCAGATAAAAAGTGCAATGCGCATTGAAAGGCAGGCTTCGGCTTGCCTTTTTTGATTCTATACCCGTGATCA
TTGAAGATGCTTGATTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MKFVRYSLIAVAATAFSLAAYLTYQAETKPEEITIKVTPYSQLERAPKSGAQSTEATQKNGRSAEGHDNIARIHYFVKVG
DTLSTIFSSWGVPYETTQKLLEADLISLKLDTIKPGDHLEFVVDRDTKTLQQVIFHESLVERAIYTQNSDGTFAYDFVEE
PGEWREEMHSGTINGSFSSSAHRQGLTTTQIANITRVLRDKVNFARELRAGDSFHVLVRRQYVDDHLTGNTEVQGIAIKM
RGKDVEAFLAEDGRFYDRDGNSLEQAFNRYPVDKQFRRITSPFNPYRKHPVTGRISPHNGTDFATPVGSPVYSTGDGKVI
AIRNHPYAGKYLVIEHNSVYKTRYLHLSRFLVKKGDHVKRGQKIALSGATGRLTGPHLHFEVLVRNRAVDSMKADLPLAS
SIPSKDKPAFLARISQFDDMVATEQNASNVDAKEEKRTS

Sequences:

>Translated_439_residues
MKFVRYSLIAVAATAFSLAAYLTYQAETKPEEITIKVTPYSQLERAPKSGAQSTEATQKNGRSAEGHDNIARIHYFVKVG
DTLSTIFSSWGVPYETTQKLLEADLISLKLDTIKPGDHLEFVVDRDTKTLQQVIFHESLVERAIYTQNSDGTFAYDFVEE
PGEWREEMHSGTINGSFSSSAHRQGLTTTQIANITRVLRDKVNFARELRAGDSFHVLVRRQYVDDHLTGNTEVQGIAIKM
RGKDVEAFLAEDGRFYDRDGNSLEQAFNRYPVDKQFRRITSPFNPYRKHPVTGRISPHNGTDFATPVGSPVYSTGDGKVI
AIRNHPYAGKYLVIEHNSVYKTRYLHLSRFLVKKGDHVKRGQKIALSGATGRLTGPHLHFEVLVRNRAVDSMKADLPLAS
SIPSKDKPAFLARISQFDDMVATEQNASNVDAKEEKRTS
>Mature_439_residues
MKFVRYSLIAVAATAFSLAAYLTYQAETKPEEITIKVTPYSQLERAPKSGAQSTEATQKNGRSAEGHDNIARIHYFVKVG
DTLSTIFSSWGVPYETTQKLLEADLISLKLDTIKPGDHLEFVVDRDTKTLQQVIFHESLVERAIYTQNSDGTFAYDFVEE
PGEWREEMHSGTINGSFSSSAHRQGLTTTQIANITRVLRDKVNFARELRAGDSFHVLVRRQYVDDHLTGNTEVQGIAIKM
RGKDVEAFLAEDGRFYDRDGNSLEQAFNRYPVDKQFRRITSPFNPYRKHPVTGRISPHNGTDFATPVGSPVYSTGDGKVI
AIRNHPYAGKYLVIEHNSVYKTRYLHLSRFLVKKGDHVKRGQKIALSGATGRLTGPHLHFEVLVRNRAVDSMKADLPLAS
SIPSKDKPAFLARISQFDDMVATEQNASNVDAKEEKRTS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=348, Percent_Identity=40.2298850574713, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI87082174, Length=123, Percent_Identity=36.5853658536585, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49274; Mature: 49274

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVRYSLIAVAATAFSLAAYLTYQAETKPEEITIKVTPYSQLERAPKSGAQSTEATQKN
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECCHHHHHHCCCCCCCCCHHHHHC
GRSAEGHDNIARIHYFVKVGDTLSTIFSSWGVPYETTQKLLEADLISLKLDTIKPGDHLE
CCCCCCCCCEEEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCCCEE
FVVDRDTKTLQQVIFHESLVERAIYTQNSDGTFAYDFVEEPGEWREEMHSGTINGSFSSS
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCHHHHHHHHCCCCCCCCCCC
AHRQGLTTTQIANITRVLRDKVNFARELRAGDSFHVLVRRQYVDDHLTGNTEVQGIAIKM
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCEEEEEEEEE
RGKDVEAFLAEDGRFYDRDGNSLEQAFNRYPVDKQFRRITSPFNPYRKHPVTGRISPHNG
ECCCCEEHHHCCCEEECCCCCHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCEEECCCCC
TDFATPVGSPVYSTGDGKVIAIRNHPYAGKYLVIEHNSVYKTRYLHLSRFLVKKGDHVKR
CCCCCCCCCCCEECCCCEEEEEECCCCCCCEEEEECCCEEHHHHHHHHHHHHHCCCCCCC
GQKIALSGATGRLTGPHLHFEVLVRNRAVDSMKADLPLASSIPSKDKPAFLARISQFDDM
CCEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VATEQNASNVDAKEEKRTS
HHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MKFVRYSLIAVAATAFSLAAYLTYQAETKPEEITIKVTPYSQLERAPKSGAQSTEATQKN
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECCHHHHHHCCCCCCCCCHHHHHC
GRSAEGHDNIARIHYFVKVGDTLSTIFSSWGVPYETTQKLLEADLISLKLDTIKPGDHLE
CCCCCCCCCEEEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCCCEE
FVVDRDTKTLQQVIFHESLVERAIYTQNSDGTFAYDFVEEPGEWREEMHSGTINGSFSSS
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHCCCHHHHHHHHCCCCCCCCCCC
AHRQGLTTTQIANITRVLRDKVNFARELRAGDSFHVLVRRQYVDDHLTGNTEVQGIAIKM
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCEEEEEEEEE
RGKDVEAFLAEDGRFYDRDGNSLEQAFNRYPVDKQFRRITSPFNPYRKHPVTGRISPHNG
ECCCCEEHHHCCCEEECCCCCHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCEEECCCCC
TDFATPVGSPVYSTGDGKVIAIRNHPYAGKYLVIEHNSVYKTRYLHLSRFLVKKGDHVKR
CCCCCCCCCCCEECCCCEEEEEECCCCCCCEEEEECCCEEHHHHHHHHHHHHHCCCCCCC
GQKIALSGATGRLTGPHLHFEVLVRNRAVDSMKADLPLASSIPSKDKPAFLARISQFDDM
CCEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VATEQNASNVDAKEEKRTS
HHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]