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The map label for this gene is rtn [H]

Identifier: 156976674

GI number: 156976674

Start: 664701

End: 666170

Strand: Direct

Name: rtn [H]

Synonym: VIBHAR_05448

Alternate gene names: 156976674

Gene position: 664701-666170 (Clockwise)

Preceding gene: 156976669

Following gene: 156976677

Centisome position: 30.16

GC content: 42.38

Gene sequence:

>1470_bases
ATGATAAAGAAAGAGCTTTTGAAAAAAGCCATTATTTTTCTTCTGCCTATACCGTTGGTTGCGGCAGAAGTACTTTATTC
ATCTCACCAAAGTGTTCAGCGAAATCTTGTCCATATTCTTGATAACGATACTCCAGTTGTGGAGGAGATTTTTCACCAGA
TTAAGGCAGAGAATCGCACTGCCCTGTTACGCCCTGAGCATTGCGAGGCTCTACAGTATAACTTAATGTTCGAGCGTCAC
ATCGACGAGATGCTCATTCTCAAGGATGATGAAATAATCTGCTCGTCAAAGCTCGGTGCGATATCCCGTCCTGCGGATGA
CTATATCCAAATGTATCGCCCAGAGACACTCTCACTTGGTCGTGTAAATGGTTATCCAGATCAGGTTTTGTTCTTAAGTA
TTACCAGCGAAGAGCATCCTGAATACAGAGCAGTGACCATCATCGACCGAGACTACTTTGCTGCCACGGTTGGTTACCGA
AATGACTTTAGACTTAAACGTACTGCTATTTTTGTTGGTGATGAGTCTGCACCAATGGATTTAACGAAAGATGGTGAGAA
CGAAACTGCGCTTTATTACTCTTCGAGTTTCGATTATGAGATCTTAATTGAAGCAAGTGACGATTTTATCGAGCAAAAGC
GTTTCTCATCCTTCTATTCTTCCATTCCGGCTTTACTGACCTTTTACTTATTCATTTTTCTCGTCCGTCGCTTTATCGAT
CCACAGCGCAACATGGTCTCTGAGCTTAAAAAAGCAATCAGAAAGCGTGAATTGAAGCTCTACTATCAACTTCAAGTGGA
TGCTCAAACAGGCAAAGTCTTTGGTTATGAGGCATTAGTTCGATGGCCGCATAAACTGAGAGGTTTTATCTCACCGGATG
AATTTGTACCTGTGGCAGAAGAGAGTGGGTTGGTAGAAAGCCTAACCGACTTTGTGTTGGATAAAGCTTGTGAAGACTTC
TCAAAAGTTAAATTAGAAGAGTCGATACATTTGGGCGTCAACGTACCGCCTGGTTATTTGTCTGATTCCCATGTGATAAG
AAAAATTGAGAACATTCATCGTACTTTAAAACAACACAACGTCGAATTAGGGATTGAAATTACCGAAAGGCAGTTGATAG
ACAGTAACGCCATTCAACATATCGCTGCTCTGCGAGTCCATGGTATTCAAGTGCTTATCGATGATTTTGGTACAGGGCAA
ACCGCCTTAGCCGTGTTACAGCACATGAAGGTCGATTACTTGAAAATCGATAAGTGTTTTGTCGACACTATTGGGATTGA
GAGTGTTAATTCGTCAGTATTACACGCCATAGTCAGGCTGGCTGGAGATTTAAGTGTTGAGTTGGTTGCAGAAGGCGTAG
AGACAAAAGAGCAAGCTGACCACTTAAAAGCGTTAGGGGTGAACATTCACCAAGGTTACTTCTATGCTAAGCCACTCCCT
TATGCCGAAGTGCTTGGCAATAGAGAGTAG

Upstream 100 bases:

>100_bases
ATAGTCGTGCCTTTTAGTAATGAGCCTCAATAAGTAGTTGATAGAAAGGCACTACTTACTCTTTCGCTACCTAGTTTTAT
TCAGAAGAGACAATATTTAA

Downstream 100 bases:

>100_bases
ACGTTTATTCGATGTGCCCCTTGTAGCACTGAGACGCTTGATCGAACTTAAACTCAAGATAGTTTTGAATGCTGTCTAAG
CCATCTTCTTGATAATGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MIKKELLKKAIIFLLPIPLVAAEVLYSSHQSVQRNLVHILDNDTPVVEEIFHQIKAENRTALLRPEHCEALQYNLMFERH
IDEMLILKDDEIICSSKLGAISRPADDYIQMYRPETLSLGRVNGYPDQVLFLSITSEEHPEYRAVTIIDRDYFAATVGYR
NDFRLKRTAIFVGDESAPMDLTKDGENETALYYSSSFDYEILIEASDDFIEQKRFSSFYSSIPALLTFYLFIFLVRRFID
PQRNMVSELKKAIRKRELKLYYQLQVDAQTGKVFGYEALVRWPHKLRGFISPDEFVPVAEESGLVESLTDFVLDKACEDF
SKVKLEESIHLGVNVPPGYLSDSHVIRKIENIHRTLKQHNVELGIEITERQLIDSNAIQHIAALRVHGIQVLIDDFGTGQ
TALAVLQHMKVDYLKIDKCFVDTIGIESVNSSVLHAIVRLAGDLSVELVAEGVETKEQADHLKALGVNIHQGYFYAKPLP
YAEVLGNRE

Sequences:

>Translated_489_residues
MIKKELLKKAIIFLLPIPLVAAEVLYSSHQSVQRNLVHILDNDTPVVEEIFHQIKAENRTALLRPEHCEALQYNLMFERH
IDEMLILKDDEIICSSKLGAISRPADDYIQMYRPETLSLGRVNGYPDQVLFLSITSEEHPEYRAVTIIDRDYFAATVGYR
NDFRLKRTAIFVGDESAPMDLTKDGENETALYYSSSFDYEILIEASDDFIEQKRFSSFYSSIPALLTFYLFIFLVRRFID
PQRNMVSELKKAIRKRELKLYYQLQVDAQTGKVFGYEALVRWPHKLRGFISPDEFVPVAEESGLVESLTDFVLDKACEDF
SKVKLEESIHLGVNVPPGYLSDSHVIRKIENIHRTLKQHNVELGIEITERQLIDSNAIQHIAALRVHGIQVLIDDFGTGQ
TALAVLQHMKVDYLKIDKCFVDTIGIESVNSSVLHAIVRLAGDLSVELVAEGVETKEQADHLKALGVNIHQGYFYAKPLP
YAEVLGNRE
>Mature_489_residues
MIKKELLKKAIIFLLPIPLVAAEVLYSSHQSVQRNLVHILDNDTPVVEEIFHQIKAENRTALLRPEHCEALQYNLMFERH
IDEMLILKDDEIICSSKLGAISRPADDYIQMYRPETLSLGRVNGYPDQVLFLSITSEEHPEYRAVTIIDRDYFAATVGYR
NDFRLKRTAIFVGDESAPMDLTKDGENETALYYSSSFDYEILIEASDDFIEQKRFSSFYSSIPALLTFYLFIFLVRRFID
PQRNMVSELKKAIRKRELKLYYQLQVDAQTGKVFGYEALVRWPHKLRGFISPDEFVPVAEESGLVESLTDFVLDKACEDF
SKVKLEESIHLGVNVPPGYLSDSHVIRKIENIHRTLKQHNVELGIEITERQLIDSNAIQHIAALRVHGIQVLIDDFGTGQ
TALAVLQHMKVDYLKIDKCFVDTIGIESVNSSVLHAIVRLAGDLSVELVAEGVETKEQADHLKALGVNIHQGYFYAKPLP
YAEVLGNRE

Specific function: Involved in resistance to phages N4 and lambda [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1788502, Length=283, Percent_Identity=35.3356890459364, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI87081845, Length=281, Percent_Identity=32.3843416370107, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=36, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87081921, Length=263, Percent_Identity=35.7414448669202, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI87081980, Length=237, Percent_Identity=37.1308016877637, Blast_Score=158, Evalue=9e-40,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=37.0212765957447, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081743, Length=296, Percent_Identity=30.0675675675676, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1787541, Length=238, Percent_Identity=33.6134453781513, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI226510982, Length=260, Percent_Identity=32.6923076923077, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=244, Percent_Identity=31.9672131147541, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=28.2868525896414, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=28, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 55822; Mature: 55822

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKELLKKAIIFLLPIPLVAAEVLYSSHQSVQRNLVHILDNDTPVVEEIFHQIKAENRT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
ALLRPEHCEALQYNLMFERHIDEMLILKDDEIICSSKLGAISRPADDYIQMYRPETLSLG
EEECCHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCHHHHHHHCCCCCCCCC
RVNGYPDQVLFLSITSEEHPEYRAVTIIDRDYFAATVGYRNDFRLKRTAIFVGDESAPMD
CCCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEECCCCCCCEEEEEEEEECCCCCCCC
LTKDGENETALYYSSSFDYEILIEASDDFIEQKRFSSFYSSIPALLTFYLFIFLVRRFID
CCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQRNMVSELKKAIRKRELKLYYQLQVDAQTGKVFGYEALVRWPHKLRGFISPDEFVPVAE
HHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEECHHHHHHCCHHHCCCCCCCCCCCCCC
ESGLVESLTDFVLDKACEDFSKVKLEESIHLGVNVPPGYLSDSHVIRKIENIHRTLKQHN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
VELGIEITERQLIDSNAIQHIAALRVHGIQVLIDDFGTGQTALAVLQHMKVDYLKIDKCF
CEEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEECHHH
VDTIGIESVNSSVLHAIVRLAGDLSVELVAEGVETKEQADHLKALGVNIHQGYFYAKPLP
HHHCCHHHCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCEEECCEEEECCCC
YAEVLGNRE
HHHHCCCCC
>Mature Secondary Structure
MIKKELLKKAIIFLLPIPLVAAEVLYSSHQSVQRNLVHILDNDTPVVEEIFHQIKAENRT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
ALLRPEHCEALQYNLMFERHIDEMLILKDDEIICSSKLGAISRPADDYIQMYRPETLSLG
EEECCHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCHHHHHHHCCCCCCCCC
RVNGYPDQVLFLSITSEEHPEYRAVTIIDRDYFAATVGYRNDFRLKRTAIFVGDESAPMD
CCCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEECCCCCCCEEEEEEEEECCCCCCCC
LTKDGENETALYYSSSFDYEILIEASDDFIEQKRFSSFYSSIPALLTFYLFIFLVRRFID
CCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQRNMVSELKKAIRKRELKLYYQLQVDAQTGKVFGYEALVRWPHKLRGFISPDEFVPVAE
HHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEECHHHHHHCCHHHCCCCCCCCCCCCCC
ESGLVESLTDFVLDKACEDFSKVKLEESIHLGVNVPPGYLSDSHVIRKIENIHRTLKQHN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
VELGIEITERQLIDSNAIQHIAALRVHGIQVLIDDFGTGQTALAVLQHMKVDYLKIDKCF
CEEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEECHHH
VDTIGIESVNSSVLHAIVRLAGDLSVELVAEGVETKEQADHLKALGVNIHQGYFYAKPLP
HHHCCHHHCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCEEECCEEEECCCC
YAEVLGNRE
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 9079933 [H]