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The map label for this gene is cspLB [H]

Identifier: 156976622

GI number: 156976622

Start: 619611

End: 619820

Strand: Reverse

Name: cspLB [H]

Synonym: VIBHAR_05396

Alternate gene names: 156976622

Gene position: 619820-619611 (Counterclockwise)

Preceding gene: 156976624

Following gene: 156976621

Centisome position: 28.12

GC content: 42.38

Gene sequence:

>210_bases
ATGTCTAACAAAGCTACTGGTACAGTTAAGTGGTTCAACGAAACTAAAGGCTTCGGTTTCATCCAACAAGAAAACGGTCC
TGACGTTTTCGCTCACTTCTCTGCAATCCAAGGTGACGGCTTCCGTACGCTTGTTGAAGGTCAGAAAGTAGAATTCGAAA
TCACTCAAGGTCAAAAAGGTCCACAAGCTGAGAAAATCACTCTAGTTTAA

Upstream 100 bases:

>100_bases
AACTCCCCCGTCCTGTGGTACGCAATAGCAATTTATTTTTCCACGCTATAAGCGCCGATTAGGCGAGATTTACACAAAAT
TAGATATTTAGGAAATAGAC

Downstream 100 bases:

>100_bases
TCCTTTTAAGATTTTGATATGATAGCCAGCTTTTAGCTGGCTATTTTTTTGCCCTTCATTTGTTGATACTTCCCATGGCT
CTAAAACCAACAATATACAA

Product: hypothetical protein

Products: NA

Alternate protein names: CspB [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNKATGTVKWFNETKGFGFIQQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKGPQAEKITLV

Sequences:

>Translated_69_residues
MSNKATGTVKWFNETKGFGFIQQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKGPQAEKITLV
>Mature_68_residues
SNKATGTVKWFNETKGFGFIQQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKGPQAEKITLV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=66.1538461538461, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=65.6716417910448, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=62.3188405797101, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=61.4285714285714, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1789979, Length=68, Percent_Identity=61.7647058823529, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=58.5714285714286, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=59.375, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7620; Mature: 7488

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKATGTVKWFNETKGFGFIQQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKG
CCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCC
PQAEKITLV
CCCCEEEEC
>Mature Secondary Structure 
SNKATGTVKWFNETKGFGFIQQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKG
CCCCCEEEEECCCCCCCEEEECCCCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCC
PQAEKITLV
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]