| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156976624
Identifier: 156976624
GI number: 156976624
Start: 620449
End: 621612
Strand: Reverse
Name: 156976624
Synonym: VIBHAR_05398
Alternate gene names: NA
Gene position: 621612-620449 (Counterclockwise)
Preceding gene: 156976631
Following gene: 156976622
Centisome position: 28.2
GC content: 46.91
Gene sequence:
>1164_bases ATGCCTTCTCAATATAGAATTAACAAAATCGTCGAAATTGGCGATACCTTGCATCGCAGTGGTTGTGCACCTTACAAAGT AGAGAAATACACTCAGCACTATGCGCAAAAACATGGCGTGGATGTGATGATTCAAGCCACACCAACCGCGATCAATTATC AGTTTCCTGATGACAACAACGCAGTGGTACTCAAACGCCTAAAACCAGCTTCCATTAACTTGAGTTTGCTGGCCAACACC ATCATTCGTATCAATCAACCAAGTAGCGAACCTGTCCCTGAACCTGCGGGATATCCTTCATGGATCATCGCATTGGCAAA CATGGGTATTCCACCCGCTTACTTAATGTTGGTTGGCAGTACCTTGGAAGCGATCGGCTTTGCTTTTATTCTCGGTTTTA TGGTCTGGGGATGTCAGCAAGTTTGCCGAGCGAGACGTGCAATTGCGGTTGAGTTTATCGCGGCTTTGTTCACTGGCATT ATTGTCGCTTACCTATCCAGCACTGGATTGCCGATTCCAGTGTGGGCGCTCTGTATCGCTACGATTGTTCTGTTTGTACC CGGACTTTCTATCGCTAACTCGCTGGAGTGTCTCGCGTTCAACGATTTGGTTTCAGGAACCAGTTTATTAGGGCAATGTG CACTCACGCTGATCAAACTGTTTGTCGGCATTACCATGGGGCTTAATATCGGTGAAGCCATTTGGGGTCAAGCGCAATCC ATCGCCTACACCAATGCAGTTCCTATTTGGATGCACATTAGTGGATTGTTCATCATTTCAATCAGCCTTGGGGTGATCTT TAATGCCCGCCCTATCGACATTCTACTCGGCTTACCTGTGGCAATGTTGGGAATGTGGGGGCCATTTTATCTGGGTTTAG AAAGTGGCTGGGTTGTGGGCACTTGGGTTACCACTGTACTGATTACCCTATACGGGACTTGGATTGCGAAAAAGATGGAA CTGACGGGCTCTATCTACATTGTTCAAGGCATTATCATATTGGTTCCGGGTAGCCGTGTATTGGTCAGTGCGAGCCAATC CGTGTTTGAGCAATCGATTTTGCCGATCCCAAGCATTGGTTTGTCTGCGCTGTTTATGTTCTCGGCGATCGTTGCAGGGC AAATCACAGCCTATTCTATTTACTCACCAAAAATCGAACGCTAG
Upstream 100 bases:
>100_bases CACAAAATCACATCAAAAAAGTAATGATTATTCGCTCGATAAGAATCACTTTGTTAACTTACGCGCAATTTTTTTGTGAC CCAAAATTTTCGCTTTCGCC
Downstream 100 bases:
>100_bases ACACCGTATCTCCATAACCTTCAGATAAGAAAAAAGCCCTATTCAAAATCCACATTAGTGAGAACTTTGAATAGGGCTCT TTGCCTCTATGCTTCGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MPSQYRINKIVEIGDTLHRSGCAPYKVEKYTQHYAQKHGVDVMIQATPTAINYQFPDDNNAVVLKRLKPASINLSLLANT IIRINQPSSEPVPEPAGYPSWIIALANMGIPPAYLMLVGSTLEAIGFAFILGFMVWGCQQVCRARRAIAVEFIAALFTGI IVAYLSSTGLPIPVWALCIATIVLFVPGLSIANSLECLAFNDLVSGTSLLGQCALTLIKLFVGITMGLNIGEAIWGQAQS IAYTNAVPIWMHISGLFIISISLGVIFNARPIDILLGLPVAMLGMWGPFYLGLESGWVVGTWVTTVLITLYGTWIAKKME LTGSIYIVQGIIILVPGSRVLVSASQSVFEQSILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIER
Sequences:
>Translated_387_residues MPSQYRINKIVEIGDTLHRSGCAPYKVEKYTQHYAQKHGVDVMIQATPTAINYQFPDDNNAVVLKRLKPASINLSLLANT IIRINQPSSEPVPEPAGYPSWIIALANMGIPPAYLMLVGSTLEAIGFAFILGFMVWGCQQVCRARRAIAVEFIAALFTGI IVAYLSSTGLPIPVWALCIATIVLFVPGLSIANSLECLAFNDLVSGTSLLGQCALTLIKLFVGITMGLNIGEAIWGQAQS IAYTNAVPIWMHISGLFIISISLGVIFNARPIDILLGLPVAMLGMWGPFYLGLESGWVVGTWVTTVLITLYGTWIAKKME LTGSIYIVQGIIILVPGSRVLVSASQSVFEQSILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIER >Mature_386_residues PSQYRINKIVEIGDTLHRSGCAPYKVEKYTQHYAQKHGVDVMIQATPTAINYQFPDDNNAVVLKRLKPASINLSLLANTI IRINQPSSEPVPEPAGYPSWIIALANMGIPPAYLMLVGSTLEAIGFAFILGFMVWGCQQVCRARRAIAVEFIAALFTGII VAYLSSTGLPIPVWALCIATIVLFVPGLSIANSLECLAFNDLVSGTSLLGQCALTLIKLFVGITMGLNIGEAIWGQAQSI AYTNAVPIWMHISGLFIISISLGVIFNARPIDILLGLPVAMLGMWGPFYLGLESGWVVGTWVTTVLITLYGTWIAKKMEL TGSIYIVQGIIILVPGSRVLVSASQSVFEQSILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41810; Mature: 41679
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSQYRINKIVEIGDTLHRSGCAPYKVEKYTQHYAQKHGVDVMIQATPTAINYQFPDDNN CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCC AVVLKRLKPASINLSLLANTIIRINQPSSEPVPEPAGYPSWIIALANMGIPPAYLMLVGS EEEEEECCCCCCCHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH TLEAIGFAFILGFMVWGCQQVCRARRAIAVEFIAALFTGIIVAYLSSTGLPIPVWALCIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TIVLFVPGLSIANSLECLAFNDLVSGTSLLGQCALTLIKLFVGITMGLNIGEAIWGQAQS HHHHHHCCCHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHH IAYTNAVPIWMHISGLFIISISLGVIFNARPIDILLGLPVAMLGMWGPFYLGLESGWVVG EEECCCCEEEEEHHHHEEEEEEHHHEECCCCHHHHHHHHHHHHHCCCCCEEECCCCEEHH TWVTTVLITLYGTWIAKKMELTGSIYIVQGIIILVPGSRVLVSASQSVFEQSILPIPSIG HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECHHHHHHHHCCCCCCHH LSALFMFSAIVAGQITAYSIYSPKIER HHHHHHHHHHHHCCCEEEEECCCCCCC >Mature Secondary Structure PSQYRINKIVEIGDTLHRSGCAPYKVEKYTQHYAQKHGVDVMIQATPTAINYQFPDDNN CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCC AVVLKRLKPASINLSLLANTIIRINQPSSEPVPEPAGYPSWIIALANMGIPPAYLMLVGS EEEEEECCCCCCCHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH TLEAIGFAFILGFMVWGCQQVCRARRAIAVEFIAALFTGIIVAYLSSTGLPIPVWALCIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TIVLFVPGLSIANSLECLAFNDLVSGTSLLGQCALTLIKLFVGITMGLNIGEAIWGQAQS HHHHHHCCCHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHH IAYTNAVPIWMHISGLFIISISLGVIFNARPIDILLGLPVAMLGMWGPFYLGLESGWVVG EEECCCCEEEEEHHHHEEEEEEHHHEECCCCHHHHHHHHHHHHHCCCCCEEECCCCEEHH TWVTTVLITLYGTWIAKKMELTGSIYIVQGIIILVPGSRVLVSASQSVFEQSILPIPSIG HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECHHHHHHHHCCCCCCHH LSALFMFSAIVAGQITAYSIYSPKIER HHHHHHHHHHHHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA