Click here to switch to the map view.

The map label for this gene is 156976392

Identifier: 156976392

GI number: 156976392

Start: 417833

End: 418681

Strand: Direct

Name: 156976392

Synonym: VIBHAR_05165

Alternate gene names: NA

Gene position: 417833-418681 (Clockwise)

Preceding gene: 156976391

Following gene: 156976393

Centisome position: 18.96

GC content: 44.17

Gene sequence:

>849_bases
ATGGAGAAAGTGCAGTTAGTCGTCGGTTTTCTTCTCACTCACAAAATTTTATTTTCCGCATTAATCCTGCTGTTTATCAT
TGTTCTGCGTCGTTTGATTCTGTCTCGAATTCGTGGCGACGATGCTTTCATTACGGAAGAACAACGCAGTTGGATGTCGA
GAACCAAAAACGGCACATTTGCTCTCACTTTGATTCTGCTGTTCATCTTATGGCAATCAGAAATTAGCGAGTTTGCCCTA
AGCGTTACGGCGATTGCAGTGGCGATTGTTGTCGCATCCAAAGAGATTATTCTTTGTTTTACTGGTTCGATTCAGCGAGC
CAGTTCGCGTTCATTCCGCATTGGTGATTGGATTGAAGTCGGCAAGCTGTGTGGTGAGGTTATTGAGCACAACATGATGG
CGACAGTGATTCAAGAAATCGACCTGCATCATGGGCAATACCACTTCACGGGGAAAACCGCGACGTTGCCCAACAGCATG
TTCTTTACCTACCCAGTGAAGAACCTCAACTTTATGAAGCGTTACGTTTACCATGACTTTTCTGTTGTGGTGAAAGACTT
CGTCAATCTCTACCCACTTTTGCCTTTACTGACCGATAAGATTGATGAGCATTGCAGTTACTTTGCCGATGTTGCTCACC
GTTATAACGCGATGATCGAGAAGCACGCTGGTGTCGATCTTCCGGGGGCTGAGCCGCATATCCATATATCAAGCAACATC
AATGGTGAGCAAATCGTGCATATCATGATTTTCTGCCCAACTGACAAGGCAAACCATTTAGAACATCTGATTCGCAAAGA
CTTTATGGAGCTTTATGAGCAACGATTTCCAATGAATTCGAAGCATTAA

Upstream 100 bases:

>100_bases
TAATTTGTTAAGGTTGTCTTCTCGCAAGCTAGCTATCTATTTTCTGAGCGATATTTAGCATGAAAGGTCAACCTATCTAA
ACCAAACAGGGAGTCGGGTA

Downstream 100 bases:

>100_bases
GTTCTCGCTCAATAATCACCAGCTCAATGTAAACCCTCACCAATCAAAGGTGGGGGTTATTTTTATTGTTCATTTGTCGT
CACGATAAAATATCTTAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Channel; Integral Membrane Protein; Mechanosensitive Ion Channel MscS; Membrane Associated Protein; Mechanosensitive Ion Channel Protein MscS; Mechanosensitive Ion Channel

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MEKVQLVVGFLLTHKILFSALILLFIIVLRRLILSRIRGDDAFITEEQRSWMSRTKNGTFALTLILLFILWQSEISEFAL
SVTAIAVAIVVASKEIILCFTGSIQRASSRSFRIGDWIEVGKLCGEVIEHNMMATVIQEIDLHHGQYHFTGKTATLPNSM
FFTYPVKNLNFMKRYVYHDFSVVVKDFVNLYPLLPLLTDKIDEHCSYFADVAHRYNAMIEKHAGVDLPGAEPHIHISSNI
NGEQIVHIMIFCPTDKANHLEHLIRKDFMELYEQRFPMNSKH

Sequences:

>Translated_282_residues
MEKVQLVVGFLLTHKILFSALILLFIIVLRRLILSRIRGDDAFITEEQRSWMSRTKNGTFALTLILLFILWQSEISEFAL
SVTAIAVAIVVASKEIILCFTGSIQRASSRSFRIGDWIEVGKLCGEVIEHNMMATVIQEIDLHHGQYHFTGKTATLPNSM
FFTYPVKNLNFMKRYVYHDFSVVVKDFVNLYPLLPLLTDKIDEHCSYFADVAHRYNAMIEKHAGVDLPGAEPHIHISSNI
NGEQIVHIMIFCPTDKANHLEHLIRKDFMELYEQRFPMNSKH
>Mature_282_residues
MEKVQLVVGFLLTHKILFSALILLFIIVLRRLILSRIRGDDAFITEEQRSWMSRTKNGTFALTLILLFILWQSEISEFAL
SVTAIAVAIVVASKEIILCFTGSIQRASSRSFRIGDWIEVGKLCGEVIEHNMMATVIQEIDLHHGQYHFTGKTATLPNSM
FFTYPVKNLNFMKRYVYHDFSVVVKDFVNLYPLLPLLTDKIDEHCSYFADVAHRYNAMIEKHAGVDLPGAEPHIHISSNI
NGEQIVHIMIFCPTDKANHLEHLIRKDFMELYEQRFPMNSKH

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32453; Mature: 32453

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVQLVVGFLLTHKILFSALILLFIIVLRRLILSRIRGDDAFITEEQRSWMSRTKNGTF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHH
ALTLILLFILWQSEISEFALSVTAIAVAIVVASKEIILCFTGSIQRASSRSFRIGDWIEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCHHHHHH
GKLCGEVIEHNMMATVIQEIDLHHGQYHFTGKTATLPNSMFFTYPVKNLNFMKRYVYHDF
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEECCCHHHHHHHHHHHHH
SVVVKDFVNLYPLLPLLTDKIDEHCSYFADVAHRYNAMIEKHAGVDLPGAEPHIHISSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
NGEQIVHIMIFCPTDKANHLEHLIRKDFMELYEQRFPMNSKH
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKVQLVVGFLLTHKILFSALILLFIIVLRRLILSRIRGDDAFITEEQRSWMSRTKNGTF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHH
ALTLILLFILWQSEISEFALSVTAIAVAIVVASKEIILCFTGSIQRASSRSFRIGDWIEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCHHHHHH
GKLCGEVIEHNMMATVIQEIDLHHGQYHFTGKTATLPNSMFFTYPVKNLNFMKRYVYHDF
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEECCCHHHHHHHHHHHHH
SVVVKDFVNLYPLLPLLTDKIDEHCSYFADVAHRYNAMIEKHAGVDLPGAEPHIHISSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
NGEQIVHIMIFCPTDKANHLEHLIRKDFMELYEQRFPMNSKH
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA