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The map label for this gene is ompA [H]

Identifier: 156976391

GI number: 156976391

Start: 416830

End: 417735

Strand: Direct

Name: ompA [H]

Synonym: VIBHAR_05164

Alternate gene names: 156976391

Gene position: 416830-417735 (Clockwise)

Preceding gene: 156976390

Following gene: 156976392

Centisome position: 18.91

GC content: 46.58

Gene sequence:

>906_bases
ATGAAAACGACGATTCGTTTGTTAAGCGGAATGATCGCAGGAGCAATGTTGGCAGGTTGCTCGGCAGATGCGTATGTTAG
CCAAGAGAACCGAGAAAAGTTTGCCGATGTCAATGTCTCCAAGTTTTTGATCAGTGAATGTTTAGCGCCGCAACGTGAAA
TCCATTTTGCGGTTGCCGAGCATTTCGATTTCGATAAATCTTTCATTCGTGAAGCCGATGCGGTAAGCCTAGATGTGTTC
ATCCGCAATATTCAAGGCTTGAGCGGGCGCATCACGATTGTTGGTCACACTGATTTTAAAGGCTCTGATGAATATAACGA
TAAGCTGTCTATGCGCCGAGCTGAATCGGTAGAGGCGTATCTCCAGCAACAACTCGATCCAGAGCAATACGATTGGGAAG
TGAAGCACTTTGGTGAGTCGCAGCCGCTAGCGTTGGGTAAATCAGATCAAGATCGTGCCGAAAACCGTCGTGCTTACGTG
ATGTTTGAAGAGGCGCAGAAGTACGAAGAGATGCCTTTCTGTGAGCCGCCAAAACCAGAACGTAAGATCTACATGGCGAT
GACACCACACTTTGATTTCGATAAGTCGGAATTAAAACCGGAAGACCTTTCACAATTAGATGATTTCATCGCAAAACTGC
AAGGTTTAGAAGGGAGCATTATGGTGGCTGGTCATACCGACCAAGTCGGTTCGCTCTCTTATAATGAACAATTGGCGGAA
CGAAGAGCGCAAACCGTGGTGGCGTATCTCAAGACGAAACTCGATCCATCGCAGTTTGTGTGGGAAGTAAAAGCCTTTGG
TGAGCTTCAACCTGTGATCAACGAAGAATCTCCAGAAGCCAATGCTTTAAACCGCCGTGCGTTTATCGTATTTAAAGAGA
GCGAACTGGGGCAACCGACTGAATAA

Upstream 100 bases:

>100_bases
TTACAACTTCTCAGGCTTTGATGGCAACCTAGCGAATGATGACGATTACGACGCATCAGGTGTGTTCATTAACCTAGTTG
GTAAGTTATAAGAGGGCGAT

Downstream 100 bases:

>100_bases
TTTGTTAAGGTTGTCTTCTCGCAAGCTAGCTATCTATTTTCTGAGCGATATTTAGCATGAAAGGTCAACCTATCTAAACC
AAACAGGGAGTCGGGTAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKTTIRLLSGMIAGAMLAGCSADAYVSQENREKFADVNVSKFLISECLAPQREIHFAVAEHFDFDKSFIREADAVSLDVF
IRNIQGLSGRITIVGHTDFKGSDEYNDKLSMRRAESVEAYLQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRRAYV
MFEEAQKYEEMPFCEPPKPERKIYMAMTPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTDQVGSLSYNEQLAE
RRAQTVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRRAFIVFKESELGQPTE

Sequences:

>Translated_301_residues
MKTTIRLLSGMIAGAMLAGCSADAYVSQENREKFADVNVSKFLISECLAPQREIHFAVAEHFDFDKSFIREADAVSLDVF
IRNIQGLSGRITIVGHTDFKGSDEYNDKLSMRRAESVEAYLQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRRAYV
MFEEAQKYEEMPFCEPPKPERKIYMAMTPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTDQVGSLSYNEQLAE
RRAQTVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRRAFIVFKESELGQPTE
>Mature_301_residues
MKTTIRLLSGMIAGAMLAGCSADAYVSQENREKFADVNVSKFLISECLAPQREIHFAVAEHFDFDKSFIREADAVSLDVF
IRNIQGLSGRITIVGHTDFKGSDEYNDKLSMRRAESVEAYLQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRRAYV
MFEEAQKYEEMPFCEPPKPERKIYMAMTPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTDQVGSLSYNEQLAE
RRAQTVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRRAFIVFKESELGQPTE

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=102, Percent_Identity=40.1960784313725, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 34255; Mature: 34255

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTIRLLSGMIAGAMLAGCSADAYVSQENREKFADVNVSKFLISECLAPQREIHFAVAE
CCHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
HFDFDKSFIREADAVSLDVFIRNIQGLSGRITIVGHTDFKGSDEYNDKLSMRRAESVEAY
HCCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRRAYVMFEEAQKYEEMPFCEPPKPE
HHHCCCCCCCCCHHHHCCCCCCEECCCCCHHHHHCCEEEEEEHHHHHHHCCCCCCCCCCC
RKIYMAMTPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTDQVGSLSYNEQLAE
CEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHH
RRAQTVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRRAFIVFKESELGQPT
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
E
C
>Mature Secondary Structure
MKTTIRLLSGMIAGAMLAGCSADAYVSQENREKFADVNVSKFLISECLAPQREIHFAVAE
CCHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
HFDFDKSFIREADAVSLDVFIRNIQGLSGRITIVGHTDFKGSDEYNDKLSMRRAESVEAY
HCCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRRAYVMFEEAQKYEEMPFCEPPKPE
HHHCCCCCCCCCHHHHCCCCCCEECCCCCHHHHHCCEEEEEEHHHHHHHCCCCCCCCCCC
RKIYMAMTPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTDQVGSLSYNEQLAE
CEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHH
RRAQTVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRRAFIVFKESELGQPT
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]