Click here to switch to the map view.

The map label for this gene is 156976327

Identifier: 156976327

GI number: 156976327

Start: 338596

End: 339342

Strand: Reverse

Name: 156976327

Synonym: VIBHAR_05100

Alternate gene names: NA

Gene position: 339342-338596 (Counterclockwise)

Preceding gene: 156976330

Following gene: 156976322

Centisome position: 15.4

GC content: 46.99

Gene sequence:

>747_bases
ATGAGAAATATGATCGCGAGCGCCGGAGATAAGAGAACATCTCCACAAAGCAGAAACGCTCCAGAACGTCAGGCAAGTAC
ACTCAACAGCACCGATGCAATGGCAATGGTAGAACACGGCAGTGAAGTGACTCTCAACGTCACCACGCCCGTTGGTACCA
AGTTCATCACCACCAGTACATTTATGGGCTGTCATTCTAACAATACCGCGCTGATTGAAATCCCAAATATCTCCGATGAG
GATTTGAAGTTCTACTTTCAAGAAGGCTTTTGGATCAACGTAAAAGCTTACTCCCATCGTGGCGAAGGTGCCGTCATTCC
TTTCCGAGCACAGCTCAAACACCGTTTAGGCGACCCCTACCCACTATTGGTGCTAAACCTTCCTAATACCATGCAGGTAT
ATCAGCTGAGAAAAGAAGTGCGATACGAAGTGAATCTGCGCTCTCGCCTTCAGTTTGAACAATACCGAGCAGAATGTGAG
ATACGTGATCTCTCTAAAAGCGGTTGTCGATTCGTGACGTCACCGATGAGCAGAACATTGCAAGTTGGCGATCTGGTGAC
ACTCGACATTACCATGCCAGGGAATGGTCGTATGCTTGCGCCATTGAAGGGAAGAATTTGTAACTTGCAGAAATCGGTTC
ATTACGCCCGTTACGGCGTGGAGTTTGATGATTTCGGCAAAGCCAACGCTAAGAACCTGTTAAGCCACCTCAAATTTGAT
GGTACCAAGCTAAAGCTGAAAAGTTAA

Upstream 100 bases:

>100_bases
AACCATCTATACGACTGCCTAGAATGATACCCACGAATCACTAGTCACTTCGTACTAATATAGCGCGTAACACCTTCTCA
CATCAGGCACGACAATAATA

Downstream 100 bases:

>100_bases
CGCAACACGGCTTTTCTGCATTTTACCGCTGTAACGGAAAAACCCCTCACCATCTGGCAAGGGGTTTTAAATGACTAAGA
ATAAGGCAGTATATTTTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRNMIASAGDKRTSPQSRNAPERQASTLNSTDAMAMVEHGSEVTLNVTTPVGTKFITTSTFMGCHSNNTALIEIPNISDE
DLKFYFQEGFWINVKAYSHRGEGAVIPFRAQLKHRLGDPYPLLVLNLPNTMQVYQLRKEVRYEVNLRSRLQFEQYRAECE
IRDLSKSGCRFVTSPMSRTLQVGDLVTLDITMPGNGRMLAPLKGRICNLQKSVHYARYGVEFDDFGKANAKNLLSHLKFD
GTKLKLKS

Sequences:

>Translated_248_residues
MRNMIASAGDKRTSPQSRNAPERQASTLNSTDAMAMVEHGSEVTLNVTTPVGTKFITTSTFMGCHSNNTALIEIPNISDE
DLKFYFQEGFWINVKAYSHRGEGAVIPFRAQLKHRLGDPYPLLVLNLPNTMQVYQLRKEVRYEVNLRSRLQFEQYRAECE
IRDLSKSGCRFVTSPMSRTLQVGDLVTLDITMPGNGRMLAPLKGRICNLQKSVHYARYGVEFDDFGKANAKNLLSHLKFD
GTKLKLKS
>Mature_248_residues
MRNMIASAGDKRTSPQSRNAPERQASTLNSTDAMAMVEHGSEVTLNVTTPVGTKFITTSTFMGCHSNNTALIEIPNISDE
DLKFYFQEGFWINVKAYSHRGEGAVIPFRAQLKHRLGDPYPLLVLNLPNTMQVYQLRKEVRYEVNLRSRLQFEQYRAECE
IRDLSKSGCRFVTSPMSRTLQVGDLVTLDITMPGNGRMLAPLKGRICNLQKSVHYARYGVEFDDFGKANAKNLLSHLKFD
GTKLKLKS

Specific function: May act as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility (Potential). Binds bis-(3'-5') cyclic diguanylic acid (c- di-GMP)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR012349 [H]

Pfam domain/function: PF07238 PilZ [H]

EC number: NA

Molecular weight: Translated: 27997; Mature: 27997

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNMIASAGDKRTSPQSRNAPERQASTLNSTDAMAMVEHGSEVTLNVTTPVGTKFITTST
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEE
FMGCHSNNTALIEIPNISDEDLKFYFQEGFWINVKAYSHRGEGAVIPFRAQLKHRLGDPY
EEEECCCCEEEEEECCCCCHHHEEEEECCEEEEEEEEEECCCCCEEEHHHHHHHHCCCCC
PLLVLNLPNTMQVYQLRKEVRYEVNLRSRLQFEQYRAECEIRDLSKSGCRFVTSPMSRTL
CEEEEECCCHHHHHHHHHHHEEEECHHHHHHHHHHHHCCEEEECCCCCCEEEECCHHHEE
QVGDLVTLDITMPGNGRMLAPLKGRICNLQKSVHYARYGVEFDDFGKANAKNLLSHLKFD
EECCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCC
GTKLKLKS
CEEEEECC
>Mature Secondary Structure
MRNMIASAGDKRTSPQSRNAPERQASTLNSTDAMAMVEHGSEVTLNVTTPVGTKFITTST
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEE
FMGCHSNNTALIEIPNISDEDLKFYFQEGFWINVKAYSHRGEGAVIPFRAQLKHRLGDPY
EEEECCCCEEEEEECCCCCHHHEEEEECCEEEEEEEEEECCCCCEEEHHHHHHHHCCCCC
PLLVLNLPNTMQVYQLRKEVRYEVNLRSRLQFEQYRAECEIRDLSKSGCRFVTSPMSRTL
CEEEEECCCHHHHHHHHHHHEEEECHHHHHHHHHHHHCCEEEECCCCCCEEEECCHHHEE
QVGDLVTLDITMPGNGRMLAPLKGRICNLQKSVHYARYGVEFDDFGKANAKNLLSHLKFD
EECCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCC
GTKLKLKS
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]