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The map label for this gene is ynaI [H]

Identifier: 156976316

GI number: 156976316

Start: 322007

End: 323206

Strand: Reverse

Name: ynaI [H]

Synonym: VIBHAR_05088

Alternate gene names: 156976316

Gene position: 323206-322007 (Counterclockwise)

Preceding gene: 156976318

Following gene: 156976315

Centisome position: 14.66

GC content: 45.83

Gene sequence:

>1200_bases
ATGAACGTTGATTTTTCGGATCACATCATTTTACTAGGGCGAAAACTCAAACTCTGCTACCTTTCACCCATTGTTCTAAA
AAATGAAACTTTAGTTATGCCACAGTGGTTTACAGAACTTCAAACTTACGTCATGGCGAACCATCAAGATTGGAGCAGCA
GCGTACTGTTCATAACAATCGCGAGCTTTTTTGCTTGGGTTGCTTGGCGCATCCTCTATTCTCGTCTCGAAATTTTATTT
AAGAAAACCTCTTTTCATTGGGATGATCTTTTACTCGAAGCACTCAAAACGCCAATCAGTACTTTGATCTGGTGTTGGCC
AGCAACGGTCTCGCTTGGCATCGTACTGCAAAGTGAGTTAGGTAACGAGTTCAACTGGCTCAGTACCCTCAAACTCATCC
TCGTGATCAGCATCTTAGTTTGGGTCGTGATGCGCCTCATCACCAACGTCGAAGATTACGTTCTCGAACAGAAAACCCGT
GACGAGACCACAGTACAAGCCGTGGCGAAAGTTGCACGTCTGTTCTTTATCGTTATTGGCGTTCTTACGGTAATGCAGGC
ATTTGGCCTTAGCCTATCTGGCTTACTGACCTTCGGTGGTGTCGGTGGTTTGATTGTCGGTTTGGCCGCAAAGGATCTAC
TTTCTAACTTCTTTGGGGGGTTGATGATTTACTTTGACCGCCCATTTAAAGTTGGAGATTGGATCCGCTCTCCTGACCGT
CAAATTGAGGGCACGGTGGAACGTATCGGCTGGCGTATGACCAGTATTCGCACCTTCGATAAGCGTCCTTTGTACGTACC
GAACTCTGTCTTCAGCAACATCGTAGTAGAGAACCCATCACGCATGTTGAACCGTCGAATCTTTGAAACGATTGGCCTGC
GTTACGACGATGCGGACAAAGTGCCAGTGATCATTGATGAAGTGCGTGAAATGCTGAAGAATCACAAAGACATAGATACA
CGCCAGACCCTCATCGTGAACTTTGATGCGTTTGGAGCGTCATCTCTTAACTTCTTTATCTATACCTTCACCAAAACAGT
GAACTGGGTTCGCTACCACGAGGTGAAGCAAGATGTACTGCTCGAAGTGATGGCGATCATTAAGAAGCACGAAGCGGATA
TCGCGTTCCCAACACAAACGCTCAAACTCGACCCACTTCAAATGGCAAAAGCTCAAGCACAAGAAAACAATGGCTTCTAA

Upstream 100 bases:

>100_bases
CATAATTTGAATTTCACCCTTCCTGTCATTAACTTGTATTTACACAAAAATCATTAACACCTAACTAAACACCCATCCTT
TACTTTTTCGTACTTAAAAG

Downstream 100 bases:

>100_bases
ACACAGCCAGAGAAATCACAAAGCCCGCTTTTTATAAGCTAATGCCGATCGGTTTAGAGACTTGAATGATCTTGGGATCG
TATGATAATCCCCACTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNVDFSDHIILLGRKLKLCYLSPIVLKNETLVMPQWFTELQTYVMANHQDWSSSVLFITIASFFAWVAWRILYSRLEILF
KKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSELGNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTR
DETTVQAVAKVARLFFIVIGVLTVMQAFGLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDR
QIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADKVPVIIDEVREMLKNHKDIDT
RQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVLLEVMAIIKKHEADIAFPTQTLKLDPLQMAKAQAQENNGF

Sequences:

>Translated_399_residues
MNVDFSDHIILLGRKLKLCYLSPIVLKNETLVMPQWFTELQTYVMANHQDWSSSVLFITIASFFAWVAWRILYSRLEILF
KKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSELGNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTR
DETTVQAVAKVARLFFIVIGVLTVMQAFGLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDR
QIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADKVPVIIDEVREMLKNHKDIDT
RQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVLLEVMAIIKKHEADIAFPTQTLKLDPLQMAKAQAQENNGF
>Mature_399_residues
MNVDFSDHIILLGRKLKLCYLSPIVLKNETLVMPQWFTELQTYVMANHQDWSSSVLFITIASFFAWVAWRILYSRLEILF
KKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSELGNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTR
DETTVQAVAKVARLFFIVIGVLTVMQAFGLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDR
QIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADKVPVIIDEVREMLKNHKDIDT
RQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVLLEVMAIIKKHEADIAFPTQTLKLDPLQMAKAQAQENNGF

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=250, Percent_Identity=56.8, Blast_Score=299, Evalue=2e-82,
Organism=Escherichia coli, GI1789291, Length=252, Percent_Identity=26.984126984127, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786670, Length=229, Percent_Identity=25.764192139738, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI2367355, Length=139, Percent_Identity=28.0575539568345, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 45875; Mature: 45875

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVDFSDHIILLGRKLKLCYLSPIVLKNETLVMPQWFTELQTYVMANHQDWSSSVLFITI
CCCCCCCCEEEECCCEEEEEECCEEECCCEEECHHHHHHHHHHHHCCCCCCCCCHHHHHH
ASFFAWVAWRILYSRLEILFKKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSEL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHC
GNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTRDETTVQAVAKVARLFFIVIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLTVMQAFGLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDR
HHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCH
QIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADK
HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
VPVIIDEVREMLKNHKDIDTRQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVL
CCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
LEVMAIIKKHEADIAFPTQTLKLDPLQMAKAQAQENNGF
HHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVDFSDHIILLGRKLKLCYLSPIVLKNETLVMPQWFTELQTYVMANHQDWSSSVLFITI
CCCCCCCCEEEECCCEEEEEECCEEECCCEEECHHHHHHHHHHHHCCCCCCCCCHHHHHH
ASFFAWVAWRILYSRLEILFKKTSFHWDDLLLEALKTPISTLIWCWPATVSLGIVLQSEL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHC
GNEFNWLSTLKLILVISILVWVVMRLITNVEDYVLEQKTRDETTVQAVAKVARLFFIVIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLTVMQAFGLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGLMIYFDRPFKVGDWIRSPDR
HHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCH
QIEGTVERIGWRMTSIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIFETIGLRYDDADK
HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
VPVIIDEVREMLKNHKDIDTRQTLIVNFDAFGASSLNFFIYTFTKTVNWVRYHEVKQDVL
CCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
LEVMAIIKKHEADIAFPTQTLKLDPLQMAKAQAQENNGF
HHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]