Click here to switch to the map view.

The map label for this gene is 156976252

Identifier: 156976252

GI number: 156976252

Start: 274155

End: 275162

Strand: Reverse

Name: 156976252

Synonym: VIBHAR_05024

Alternate gene names: NA

Gene position: 275162-274155 (Counterclockwise)

Preceding gene: 156976253

Following gene: 156976251

Centisome position: 12.48

GC content: 46.33

Gene sequence:

>1008_bases
ATGACTGAACAGAAAACAGAAACAATCACAAATGACGAAAGCTTGATGTTTAGCTTTGGTGAGCCTGAGATCATGAATCG
TGATTTTACCAACTACGATTACAGCGAGCTCTTTTACAACGACGATGGCGACTATTGGGAGCCACCGCTTGATAGAGCGG
GCTTAAACAAACTCACGCGAGCCAACGCCTATCATGGCTCTATCTTAATGGCTCGACGTAATATGATCGCTGGCCGTTAC
ATTCAAGGCGGTATGCAGAAACAACAAATGCAGTCAGCTGTGCATGACTTCTTGGAGTTCGGTGATACTGCCCTGCTTAA
ACTGCGTAACTATTTGGGCAAAGTCATAGGCCTTTGGCCAATCCCCACCATGTATTTGCGGAAACGTAAGAACGGTGACT
TCGCTTTTCTAGAGCGGGACAACAAACAAAAGCGCTACAAGAAAGAGGACATCATTTTCATCAAGCAATATGACCCTGTT
CAGCAGGTTTATGGTGGGCCCGATTACTTAGGGTGTGTTCAATCTGCACTTCTAAGCCAGGACTCGACCACCTTTCGCCG
CCGGTACTATAAGAACGGTTTGCACATGGGCTTTATCTTCTACGCCACCGACCCAAACCTAAGTAAAGAAGATGAAGATG
ACCTGAAAGAAAAGATGGCTTCGAGCCGCGGCGTAGGTAACTTTCGTTCGATGTTTATCAATATTCCGAACGGCAATGAG
AGAGGTATACAGCTCATACCCGTTGGCGATATTGCCACAAAAGATGAATATGAAAAGATTAAGAACGTGACTGCGCAAGA
GGTGATCACTGGCCACCGCTTCCCCGTTGAGCTCGCTGCCATTATTCCTAATGGTGGGACCCGTGGTGATCCTATTAAAT
TCGATTACGTCTACTGCAAAAATGAAGTCATTCCAGCTTGCGAGATGTTCATGGATGCCGTTAACGGTGATCCGGAAGTG
CCGGAAAGTCTGCATTTAACCTTTAATCTGGACAACGTTGCCACGTAA

Upstream 100 bases:

>100_bases
ACCGGACACGCCGACGCATTCTGGGCGATTTCTCATGCCTGCATTAACGAGCCGCTCGATCACTCAGAAAAACGCAAATC
AACTTGGCAGATGTAACTCT

Downstream 100 bases:

>100_bases
ACACAGTGACATTTTTTGCAATTTTGTTTTTCTCTCCGATTCACGCTCAGCCCTTACCCAGTAAGGGCTGAAGCGATACG
AAACTGATCATCAAAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTEQKTETITNDESLMFSFGEPEIMNRDFTNYDYSELFYNDDGDYWEPPLDRAGLNKLTRANAYHGSILMARRNMIAGRY
IQGGMQKQQMQSAVHDFLEFGDTALLKLRNYLGKVIGLWPIPTMYLRKRKNGDFAFLERDNKQKRYKKEDIIFIKQYDPV
QQVYGGPDYLGCVQSALLSQDSTTFRRRYYKNGLHMGFIFYATDPNLSKEDEDDLKEKMASSRGVGNFRSMFINIPNGNE
RGIQLIPVGDIATKDEYEKIKNVTAQEVITGHRFPVELAAIIPNGGTRGDPIKFDYVYCKNEVIPACEMFMDAVNGDPEV
PESLHLTFNLDNVAT

Sequences:

>Translated_335_residues
MTEQKTETITNDESLMFSFGEPEIMNRDFTNYDYSELFYNDDGDYWEPPLDRAGLNKLTRANAYHGSILMARRNMIAGRY
IQGGMQKQQMQSAVHDFLEFGDTALLKLRNYLGKVIGLWPIPTMYLRKRKNGDFAFLERDNKQKRYKKEDIIFIKQYDPV
QQVYGGPDYLGCVQSALLSQDSTTFRRRYYKNGLHMGFIFYATDPNLSKEDEDDLKEKMASSRGVGNFRSMFINIPNGNE
RGIQLIPVGDIATKDEYEKIKNVTAQEVITGHRFPVELAAIIPNGGTRGDPIKFDYVYCKNEVIPACEMFMDAVNGDPEV
PESLHLTFNLDNVAT
>Mature_334_residues
TEQKTETITNDESLMFSFGEPEIMNRDFTNYDYSELFYNDDGDYWEPPLDRAGLNKLTRANAYHGSILMARRNMIAGRYI
QGGMQKQQMQSAVHDFLEFGDTALLKLRNYLGKVIGLWPIPTMYLRKRKNGDFAFLERDNKQKRYKKEDIIFIKQYDPVQ
QVYGGPDYLGCVQSALLSQDSTTFRRRYYKNGLHMGFIFYATDPNLSKEDEDDLKEKMASSRGVGNFRSMFINIPNGNER
GIQLIPVGDIATKDEYEKIKNVTAQEVITGHRFPVELAAIIPNGGTRGDPIKFDYVYCKNEVIPACEMFMDAVNGDPEVP
ESLHLTFNLDNVAT

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 38447; Mature: 38316

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQKTETITNDESLMFSFGEPEIMNRDFTNYDYSELFYNDDGDYWEPPLDRAGLNKLTR
CCCCCCCCCCCCCCEEEECCCCHHCCCCCCCCCHHHEEECCCCCCCCCCCCHHHHHHHHH
ANAYHGSILMARRNMIAGRYIQGGMQKQQMQSAVHDFLEFGDTALLKLRNYLGKVIGLWP
CCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
IPTMYLRKRKNGDFAFLERDNKQKRYKKEDIIFIKQYDPVQQVYGGPDYLGCVQSALLSQ
CCHHHHHHCCCCCEEEEECCCHHHHCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHHCC
DSTTFRRRYYKNGLHMGFIFYATDPNLSKEDEDDLKEKMASSRGVGNFRSMFINIPNGNE
CCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCC
RGIQLIPVGDIATKDEYEKIKNVTAQEVITGHRFPVELAAIIPNGGTRGDPIKFDYVYCK
CCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEEEC
NEVIPACEMFMDAVNGDPEVPESLHLTFNLDNVAT
CCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
TEQKTETITNDESLMFSFGEPEIMNRDFTNYDYSELFYNDDGDYWEPPLDRAGLNKLTR
CCCCCCCCCCCCCEEEECCCCHHCCCCCCCCCHHHEEECCCCCCCCCCCCHHHHHHHHH
ANAYHGSILMARRNMIAGRYIQGGMQKQQMQSAVHDFLEFGDTALLKLRNYLGKVIGLWP
CCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
IPTMYLRKRKNGDFAFLERDNKQKRYKKEDIIFIKQYDPVQQVYGGPDYLGCVQSALLSQ
CCHHHHHHCCCCCEEEEECCCHHHHCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHHCC
DSTTFRRRYYKNGLHMGFIFYATDPNLSKEDEDDLKEKMASSRGVGNFRSMFINIPNGNE
CCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCC
RGIQLIPVGDIATKDEYEKIKNVTAQEVITGHRFPVELAAIIPNGGTRGDPIKFDYVYCK
CCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEEEC
NEVIPACEMFMDAVNGDPEVPESLHLTFNLDNVAT
CCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1701261 [H]