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The map label for this gene is lafA [H]

Identifier: 156976190

GI number: 156976190

Start: 217128

End: 217997

Strand: Reverse

Name: lafA [H]

Synonym: VIBHAR_04961

Alternate gene names: 156976190

Gene position: 217997-217128 (Counterclockwise)

Preceding gene: 156976191

Following gene: 156976189

Centisome position: 9.89

GC content: 46.32

Gene sequence:

>870_bases
ATGGCTTTATCTATGCATACTAACTTCGCATCGCTTGTAACTCAAAACACGCTGAACAATACAAGTAATCTTCTGAACAC
GTCAATGGAACGTTTGAGCACGGGTTACCGTATCAACTCAGCAGCAGACGATGCAGCAGGTCTACAAATTGCTACCCGTC
TTGAGTCTCAAACTCGCGGCATGAGCGTTGCAATGCGTAACTCGCAAGATGGCATTTCAATGATGCAAACTGCGGAAGGC
GCGATGGATGAAATGACAAACATCGTATACCGCATGAACGACCTAGCAACTCAAGCTTCGAACGGTTCTGTATCTGCAAA
CGACCGCACAGCACTAGACGCTGAATACCAGCAACTAGGTGAAGAACTTGCGAACATTATGGATTCAACAAGTTTTGGTG
GTAACAAGCTTCTACAAGATACAGGAGCATTTGGTGCAGGAGCAGTTGACTTCCAAATCGGTACTCAAGCGGGTGAAAAG
CTAGCAGTAAACGTGTCTACGGAAGTGCAAGCAATCAACGCTTCAATCGGAACATCTGGTTCACTAGCAGTGGGTGATCT
AACTTCAGCTGCAAACGCGCAGACTGCAATGACAGCACTAACAGGTGCAACAGGTGATGCTGGTATTCTAGGTCAAATAG
GTACTGCACGTTCAGCATTGGGTGCGAACATCAACCGTCTTGAGCACACAATGACAAACCTAGGCAACATGGTTGAGAAC
ACATCTGCAGCGAAAGGCCGTATCACTGACGCAGACTTTGCTGTTGAATCTTCAAACATGACGAAGAACCAAATGCTAAT
GCAAGCAGGTACAACAGTTCTTTCTCAAACTAACCAACTGCCAAGCATGGCAATGTCGCTACTGCGTTAA

Upstream 100 bases:

>100_bases
ATTTTCCAATTAATCATTCAAACCAAACGACCGCCTCTAGTTAGTGAGCAAGGGAGAATCCCGAAGCCTGAAAGAATAGT
TAAAAACTAAGGAGACCAAG

Downstream 100 bases:

>100_bases
TAGAACCTTTCTATTCGCTAACAACGCGCAAAATTTAGTTCGTCCGAACGCTCAAAGCCTCCCCTTCATCCGGGAGGCTT
TTTCTTTGTCTGCAAAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MALSMHTNFASLVTQNTLNNTSNLLNTSMERLSTGYRINSAADDAAGLQIATRLESQTRGMSVAMRNSQDGISMMQTAEG
AMDEMTNIVYRMNDLATQASNGSVSANDRTALDAEYQQLGEELANIMDSTSFGGNKLLQDTGAFGAGAVDFQIGTQAGEK
LAVNVSTEVQAINASIGTSGSLAVGDLTSAANAQTAMTALTGATGDAGILGQIGTARSALGANINRLEHTMTNLGNMVEN
TSAAKGRITDADFAVESSNMTKNQMLMQAGTTVLSQTNQLPSMAMSLLR

Sequences:

>Translated_289_residues
MALSMHTNFASLVTQNTLNNTSNLLNTSMERLSTGYRINSAADDAAGLQIATRLESQTRGMSVAMRNSQDGISMMQTAEG
AMDEMTNIVYRMNDLATQASNGSVSANDRTALDAEYQQLGEELANIMDSTSFGGNKLLQDTGAFGAGAVDFQIGTQAGEK
LAVNVSTEVQAINASIGTSGSLAVGDLTSAANAQTAMTALTGATGDAGILGQIGTARSALGANINRLEHTMTNLGNMVEN
TSAAKGRITDADFAVESSNMTKNQMLMQAGTTVLSQTNQLPSMAMSLLR
>Mature_288_residues
ALSMHTNFASLVTQNTLNNTSNLLNTSMERLSTGYRINSAADDAAGLQIATRLESQTRGMSVAMRNSQDGISMMQTAEGA
MDEMTNIVYRMNDLATQASNGSVSANDRTALDAEYQQLGEELANIMDSTSFGGNKLLQDTGAFGAGAVDFQIGTQAGEKL
AVNVSTEVQAINASIGTSGSLAVGDLTSAANAQTAMTALTGATGDAGILGQIGTARSALGANINRLEHTMTNLGNMVENT
SAAKGRITDADFAVESSNMTKNQMLMQAGTTVLSQTNQLPSMAMSLLR

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Essential for lateral flagellar synthesis and swarming motility [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=144, Percent_Identity=41.6666666666667, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 30073; Mature: 29942

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSMHTNFASLVTQNTLNNTSNLLNTSMERLSTGYRINSAADDAAGLQIATRLESQTRG
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCC
MSVAMRNSQDGISMMQTAEGAMDEMTNIVYRMNDLATQASNGSVSANDRTALDAEYQQLG
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
EELANIMDSTSFGGNKLLQDTGAFGAGAVDFQIGTQAGEKLAVNVSTEVQAINASIGTSG
HHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCC
SLAVGDLTSAANAQTAMTALTGATGDAGILGQIGTARSALGANINRLEHTMTNLGNMVEN
CEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHC
TSAAKGRITDADFAVESSNMTKNQMLMQAGTTVLSQTNQLPSMAMSLLR
CCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
>Mature Secondary Structure 
ALSMHTNFASLVTQNTLNNTSNLLNTSMERLSTGYRINSAADDAAGLQIATRLESQTRG
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCC
MSVAMRNSQDGISMMQTAEGAMDEMTNIVYRMNDLATQASNGSVSANDRTALDAEYQQLG
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
EELANIMDSTSFGGNKLLQDTGAFGAGAVDFQIGTQAGEKLAVNVSTEVQAINASIGTSG
HHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCC
SLAVGDLTSAANAQTAMTALTGATGDAGILGQIGTARSALGANINRLEHTMTNLGNMVEN
CEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHC
TSAAKGRITDADFAVESSNMTKNQMLMQAGTTVLSQTNQLPSMAMSLLR
CCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501040; 12620739 [H]