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The map label for this gene is dtpA [H]

Identifier: 156976127

GI number: 156976127

Start: 166008

End: 167483

Strand: Reverse

Name: dtpA [H]

Synonym: VIBHAR_04898

Alternate gene names: 156976127

Gene position: 167483-166008 (Counterclockwise)

Preceding gene: 156976128

Following gene: 156976124

Centisome position: 7.6

GC content: 44.78

Gene sequence:

>1476_bases
ATGTGGAATAAACTAAATAAATCTATGATGTTCTGCCAAATGATGTTTGGCTTATCATTTTATGGCGTGTTGGTCAGTCT
AACGCGTTTTTTCTTAGAGGATCTGAATTACAACGAAGCTGATACCATGATGATCGTGGGTGCTTTTTCAGCGATTGGCC
CCCTATTTGCGATTGCTGGCGGTTTCATCGCTGATAAATTTTTAGGTGCTTACCGTTCTCTATCGATTGCCTTCCTAGCA
TTCGCATCTGGTTACGTGCTGCTTGTTCTTGGTGCTTCGGCAACCAACGTACCGCTTTCTATGTGTGGTATCGCACTAGC
AAGTTACGGCCGTGGTTTAATGTCACCTTCTTACCCTAGCCTGTACAAACGTACCTTTAAGTCTCAAGAAGATTTCGAGA
AAGGTTATCCAATCAACTACTCAGTGAACAACGTGGGCGCTTTCCTAGGTCAATACTTGTTCCCAATGATTGTGCTGATC
ATCGGCTTTAATGGTGGTTTCACTATTTCAGCAGTGATGGCTGGCGCAGCATTGATTATGCTACTTGTGTTCCGTAAAGG
CTTGGTTGGCGTTGCTTCTGATCTGGATCGTCAAAGCGTAAGCATGAAGAACTGGATTTTCTTCGCGATCATCTCAGCGG
CGATGATTGCACTGGTATTCTTCATGTTCTCTAACATGGATATCGGTCAAAACATCGTTTATGCCATTGGCGGCGCAGCA
ATTCTTTACTTTGTTTCTTTGATGTTGAAATCAAGCAAAGCGGAATCATTGAAGATGGGTACCATCCTTATCGTTACCTT
CCTAACCACTTGTTTCTTCGTTTACTACGGTCAGATGATGACTTCAATGAACATGGTAGCGATCAACACACTAAAAGGTT
CTCTGTTTGGCTTCATTCCACTAGAGCCTGAAGCTGCAATGGCGATGAACCCGCTATGGTGTATGGTTGGTGGCCCTATC
GTTGCTGGCTTCTTTGGCATGCTAGAAAAACGCGACATTCACCTATCAACAGCAACTAAGATTGCATTGGCATTCGTGCT
AACCGCTATCGCATTCGGCATCCTAACCTTCGCGGTAACGACCGTTGGCGAAGACGTCATTATCATGCCTGAGATCTTCC
TAGCGATTCACTTCTTCCAAGCGATCGCAGAAGTTATCGTAGGTTCAATGGTCGTAGCATTCATCCTATCGGTTGCACCT
AAGCACATTGAGAACTTCTCTGTAAGCTTGTTCTCAGTAGCTATCGCGCTAAGTGGTATCGTTGGTGCCGCGTTCTCGAC
TTCTATCGCACTAGAAAAAGGTCAAGAGATCACCCAAGAGATCGTACAACACGTTTACGGCGAATACTTCCAACTGCTGA
CTATCCTAGCGGTTGTGATGGTTGCGATTGCCTTGGGCGCATCATTCATCATTCGTAAGATGCTTGAAGCGGCAAAACAA
AGTGAAACTGAATTGGAAGTGGTTGAGCAAAACTAA

Upstream 100 bases:

>100_bases
ATTCGTTTTATGCGACAATTGTTTCAATATGTAACATACCATTTAAGTAACATTTAACAGAAATAATAACTACCTTTCTC
GCAATAGTGAGTATTTAATT

Downstream 100 bases:

>100_bases
TTACCCATTTCACCTAAACATAAAAACGGAAGCTCAGTAGTTTCCGTTTTTTTATCGACGAAGTTGTTATCAAAGCGCCA
TTGCTACGCTGTAAGCGTTA

Product: dipeptide/tripeptide permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MWNKLNKSMMFCQMMFGLSFYGVLVSLTRFFLEDLNYNEADTMMIVGAFSAIGPLFAIAGGFIADKFLGAYRSLSIAFLA
FASGYVLLVLGASATNVPLSMCGIALASYGRGLMSPSYPSLYKRTFKSQEDFEKGYPINYSVNNVGAFLGQYLFPMIVLI
IGFNGGFTISAVMAGAALIMLLVFRKGLVGVASDLDRQSVSMKNWIFFAIISAAMIALVFFMFSNMDIGQNIVYAIGGAA
ILYFVSLMLKSSKAESLKMGTILIVTFLTTCFFVYYGQMMTSMNMVAINTLKGSLFGFIPLEPEAAMAMNPLWCMVGGPI
VAGFFGMLEKRDIHLSTATKIALAFVLTAIAFGILTFAVTTVGEDVIIMPEIFLAIHFFQAIAEVIVGSMVVAFILSVAP
KHIENFSVSLFSVAIALSGIVGAAFSTSIALEKGQEITQEIVQHVYGEYFQLLTILAVVMVAIALGASFIIRKMLEAAKQ
SETELEVVEQN

Sequences:

>Translated_491_residues
MWNKLNKSMMFCQMMFGLSFYGVLVSLTRFFLEDLNYNEADTMMIVGAFSAIGPLFAIAGGFIADKFLGAYRSLSIAFLA
FASGYVLLVLGASATNVPLSMCGIALASYGRGLMSPSYPSLYKRTFKSQEDFEKGYPINYSVNNVGAFLGQYLFPMIVLI
IGFNGGFTISAVMAGAALIMLLVFRKGLVGVASDLDRQSVSMKNWIFFAIISAAMIALVFFMFSNMDIGQNIVYAIGGAA
ILYFVSLMLKSSKAESLKMGTILIVTFLTTCFFVYYGQMMTSMNMVAINTLKGSLFGFIPLEPEAAMAMNPLWCMVGGPI
VAGFFGMLEKRDIHLSTATKIALAFVLTAIAFGILTFAVTTVGEDVIIMPEIFLAIHFFQAIAEVIVGSMVVAFILSVAP
KHIENFSVSLFSVAIALSGIVGAAFSTSIALEKGQEITQEIVQHVYGEYFQLLTILAVVMVAIALGASFIIRKMLEAAKQ
SETELEVVEQN
>Mature_491_residues
MWNKLNKSMMFCQMMFGLSFYGVLVSLTRFFLEDLNYNEADTMMIVGAFSAIGPLFAIAGGFIADKFLGAYRSLSIAFLA
FASGYVLLVLGASATNVPLSMCGIALASYGRGLMSPSYPSLYKRTFKSQEDFEKGYPINYSVNNVGAFLGQYLFPMIVLI
IGFNGGFTISAVMAGAALIMLLVFRKGLVGVASDLDRQSVSMKNWIFFAIISAAMIALVFFMFSNMDIGQNIVYAIGGAA
ILYFVSLMLKSSKAESLKMGTILIVTFLTTCFFVYYGQMMTSMNMVAINTLKGSLFGFIPLEPEAAMAMNPLWCMVGGPI
VAGFFGMLEKRDIHLSTATKIALAFVLTAIAFGILTFAVTTVGEDVIIMPEIFLAIHFFQAIAEVIVGSMVVAFILSVAP
KHIENFSVSLFSVAIALSGIVGAAFSTSIALEKGQEITQEIVQHVYGEYFQLLTILAVVMVAIALGASFIIRKMLEAAKQ
SETELEVVEQN

Specific function: Proton-dependent permease that transports di- and tripeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787922, Length=457, Percent_Identity=24.2888402625821, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789911, Length=462, Percent_Identity=23.3766233766234, Blast_Score=119, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 53266; Mature: 53266

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHEECCC
>Mature Secondary Structure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CCCCHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA