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The map label for this gene is yidZ [C]

Identifier: 156976124

GI number: 156976124

Start: 163242

End: 164132

Strand: Reverse

Name: yidZ [C]

Synonym: VIBHAR_04895

Alternate gene names: 156976124

Gene position: 164132-163242 (Counterclockwise)

Preceding gene: 156976127

Following gene: 156976119

Centisome position: 7.45

GC content: 45.34

Gene sequence:

>891_bases
ATGACAATCAATCTGGATATGCAAAACGTCTTGGTATTAAAGCGTATGTATGAGCTACGTAACGTGCGTTTGGTGGCAGA
ATCCCTAGGAAAAACATCTGGCGCCATCAGCAAAAATCTCACCAAAATGAAAGCGCAACTGGACGATCCTCTCTTCATTC
AAACCAAAAGTGGTTTTGAGCCGACCTCCTTTGTTGAAGCCAACATGCCGCACTTCGAGCAGATATTAACCAGTGTTGAC
GCGATCAAACCACAAGAATTTTCTCCGTCTCTCTTCACCGGAGACTTTGCTATTTACGCGAATACACTATTCTGGGATCG
ATACGGGGATAAGCTTTACTTGCAACTGCTAGAGCAAGCTCCCAATGCGAACTACTCGTTTTTAAGATGGGGAGCGGATG
CACGAAACCGTATAATCGATGGGGAAAACGCAATCGCGATCCACTACTTCGATGAAGATCTCCCTCAGTCCATTGCTCAA
AAAGAGCTGGGCAAGGGTAAAGCAGTGTTCTTTGTTCGAAAAGATCACCCAGCGCAAGAATTCCAATCCTTAGAAGATTA
CACCTTCATACTATTCAAAACTCCCGGCTGGAACGATCACAAATACCCATTATTGGATCGTTTGAAGAACATCGGTTTTG
ACGTGAAGCCCAAAGTCGAGATCGAACACCCAGCAATGATCCACAACATCATCATGAAAACCGATCACTTCGGTATCACC
ATGAGCGGGAATGTGCCCGAATGTTGTCGAAGTATCGAACTACCAAACGGGCTGGAACTTGGGGTTAGCTTTGTGATGAG
CTGCCGTCGGTCACAACAGCACGATCCGCAAAACCAATGGTTGTTCAGCGTGATTCAATCCATCATTAAGCAACATTCTA
AACTCGATTAG

Upstream 100 bases:

>100_bases
CATTAAGCCTAGTGCGATTAGTTTTTTCATACGTCACCTCGATTTCTGTGGTACATCGTTTCGATGTAGAAACTCTAGCA
ACGTTGGCTGGAGTAGAAGA

Downstream 100 bases:

>100_bases
AACTTGATTTCACCGAGCACACCAAGTGTGATGGCTTGTTGGTGTTTGTTGATGTATTCAATATCCTGCAAATACGCTCG
GTGATGACCTTCTTCCAAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator; Transcriptional Regulator LysR Family; Transcriptional Regulators LysR Family; HTH-Type Transcriptional Regulator LysR Family; Transcriptional Regulator LysR Family Protein; Transcriptional Regulator LysR-Like Protein; HTH-Type Transcriptional Regulator LysR-Family; HTH-Type Transcriptional Regulator YidZ; HTH-Type Transcriptional Activator

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTINLDMQNVLVLKRMYELRNVRLVAESLGKTSGAISKNLTKMKAQLDDPLFIQTKSGFEPTSFVEANMPHFEQILTSVD
AIKPQEFSPSLFTGDFAIYANTLFWDRYGDKLYLQLLEQAPNANYSFLRWGADARNRIIDGENAIAIHYFDEDLPQSIAQ
KELGKGKAVFFVRKDHPAQEFQSLEDYTFILFKTPGWNDHKYPLLDRLKNIGFDVKPKVEIEHPAMIHNIIMKTDHFGIT
MSGNVPECCRSIELPNGLELGVSFVMSCRRSQQHDPQNQWLFSVIQSIIKQHSKLD

Sequences:

>Translated_296_residues
MTINLDMQNVLVLKRMYELRNVRLVAESLGKTSGAISKNLTKMKAQLDDPLFIQTKSGFEPTSFVEANMPHFEQILTSVD
AIKPQEFSPSLFTGDFAIYANTLFWDRYGDKLYLQLLEQAPNANYSFLRWGADARNRIIDGENAIAIHYFDEDLPQSIAQ
KELGKGKAVFFVRKDHPAQEFQSLEDYTFILFKTPGWNDHKYPLLDRLKNIGFDVKPKVEIEHPAMIHNIIMKTDHFGIT
MSGNVPECCRSIELPNGLELGVSFVMSCRRSQQHDPQNQWLFSVIQSIIKQHSKLD
>Mature_295_residues
TINLDMQNVLVLKRMYELRNVRLVAESLGKTSGAISKNLTKMKAQLDDPLFIQTKSGFEPTSFVEANMPHFEQILTSVDA
IKPQEFSPSLFTGDFAIYANTLFWDRYGDKLYLQLLEQAPNANYSFLRWGADARNRIIDGENAIAIHYFDEDLPQSIAQK
ELGKGKAVFFVRKDHPAQEFQSLEDYTFILFKTPGWNDHKYPLLDRLKNIGFDVKPKVEIEHPAMIHNIIMKTDHFGITM
SGNVPECCRSIELPNGLELGVSFVMSCRRSQQHDPQNQWLFSVIQSIIKQHSKLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33960; Mature: 33829

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINLDMQNVLVLKRMYELRNVRLVAESLGKTSGAISKNLTKMKAQLDDPLFIQTKSGFE
CEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
PTSFVEANMPHFEQILTSVDAIKPQEFSPSLFTGDFAIYANTLFWDRYGDKLYLQLLEQA
CCHHEECCCHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEHHHHHHHCCCHHHHHHHHHC
PNANYSFLRWGADARNRIIDGENAIAIHYFDEDLPQSIAQKELGKGKAVFFVRKDHPAQE
CCCCEEEEEECCCHHCCEECCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
FQSLEDYTFILFKTPGWNDHKYPLLDRLKNIGFDVKPKVEIEHPAMIHNIIMKTDHFGIT
HHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCEE
MSGNVPECCRSIELPNGLELGVSFVMSCRRSQQHDPQNQWLFSVIQSIIKQHSKLD
ECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TINLDMQNVLVLKRMYELRNVRLVAESLGKTSGAISKNLTKMKAQLDDPLFIQTKSGFE
EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
PTSFVEANMPHFEQILTSVDAIKPQEFSPSLFTGDFAIYANTLFWDRYGDKLYLQLLEQA
CCHHEECCCHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEHHHHHHHCCCHHHHHHHHHC
PNANYSFLRWGADARNRIIDGENAIAIHYFDEDLPQSIAQKELGKGKAVFFVRKDHPAQE
CCCCEEEEEECCCHHCCEECCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
FQSLEDYTFILFKTPGWNDHKYPLLDRLKNIGFDVKPKVEIEHPAMIHNIIMKTDHFGIT
HHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCEE
MSGNVPECCRSIELPNGLELGVSFVMSCRRSQQHDPQNQWLFSVIQSIIKQHSKLD
ECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA