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The map label for this gene is 156976072

Identifier: 156976072

GI number: 156976072

Start: 108367

End: 108981

Strand: Reverse

Name: 156976072

Synonym: VIBHAR_04842

Alternate gene names: NA

Gene position: 108981-108367 (Counterclockwise)

Preceding gene: 156976073

Following gene: 156976071

Centisome position: 4.94

GC content: 47.64

Gene sequence:

>615_bases
ATGAGCCGTAACTGGTCTCTTTTTCTCGTGGTTGCTTTCGTTCTCGGCTTTGGTACTAAAACGTATCTAGACGGCCAAAA
AGAGGTAGAGAAAAAACCGCAACAAGTCGCTACCGAACAAAGCGTGCTGTTTGGCGAAGGCGATAAACCTGTCGATATCT
TCGACACTAGTGATGATCGAATTCGTATTGTTTACTTTGGCTTTACGCGCTGCCCAGATGTGTGCCCAACCTCATTAGCC
ATGCTAGCCGGCGCTCTCAACCAAATCGACGATGCACAAAAAGCACAGTTGCGTCCGATGTTCATCTCACTTGATCCGGA
ACGCGACGAAGCAGATGCATCCGCTAAGTACGCCCATTACTTCCACCCAATGATTGAAGGTCTGTCAGCGCCACTTGATG
TGACCACCCCACTTGCTCATAAGTACGGTGTCATTTTCCGTAAAACAGAGCTTGAAGGCTCGGAGCTGAAATACACACTC
GACCACAGCTCTTACTTCTATTTCTTGAAGCCTAACGGCACACTTATCACAAAAGTGCCGCATACCTTAACGCCTGCGCC
AATTGTCGAGGCAATAACCAAACTGACTGCAGAAGGAAAAACCAATGAAAGCTAA

Upstream 100 bases:

>100_bases
GCCCGTTTGTACACAAGATTCAATGACGTGGGTTGGTGAGCTTTCCGACGGTAAAGACACCATCTACCCAGCCCTCAAAA
TGCAAAGATAAGGAATAACT

Downstream 100 bases:

>100_bases
GCACGCAATCAAAACGTTGGCACTCTCCGCCCTACTTCTAAGCCCTTTGGCGCAAGCAAATCTCAACGTGATGCCACATG
AGCCGTATGCACGAGCTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSRNWSLFLVVAFVLGFGTKTYLDGQKEVEKKPQQVATEQSVLFGEGDKPVDIFDTSDDRIRIVYFGFTRCPDVCPTSLA
MLAGALNQIDDAQKAQLRPMFISLDPERDEADASAKYAHYFHPMIEGLSAPLDVTTPLAHKYGVIFRKTELEGSELKYTL
DHSSYFYFLKPNGTLITKVPHTLTPAPIVEAITKLTAEGKTNES

Sequences:

>Translated_204_residues
MSRNWSLFLVVAFVLGFGTKTYLDGQKEVEKKPQQVATEQSVLFGEGDKPVDIFDTSDDRIRIVYFGFTRCPDVCPTSLA
MLAGALNQIDDAQKAQLRPMFISLDPERDEADASAKYAHYFHPMIEGLSAPLDVTTPLAHKYGVIFRKTELEGSELKYTL
DHSSYFYFLKPNGTLITKVPHTLTPAPIVEAITKLTAEGKTNES
>Mature_203_residues
SRNWSLFLVVAFVLGFGTKTYLDGQKEVEKKPQQVATEQSVLFGEGDKPVDIFDTSDDRIRIVYFGFTRCPDVCPTSLAM
LAGALNQIDDAQKAQLRPMFISLDPERDEADASAKYAHYFHPMIEGLSAPLDVTTPLAHKYGVIFRKTELEGSELKYTLD
HSSYFYFLKPNGTLITKVPHTLTPAPIVEAITKLTAEGKTNES

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=191, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI281182722, Length=191, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI281182716, Length=191, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI153791313, Length=191, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4759068, Length=115, Percent_Identity=35.6521739130435, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531419, Length=117, Percent_Identity=31.6239316239316, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319498, Length=195, Percent_Identity=30.2564102564103, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=117, Percent_Identity=35.8974358974359, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19920710, Length=115, Percent_Identity=31.304347826087, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22755; Mature: 22624

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNWSLFLVVAFVLGFGTKTYLDGQKEVEKKPQQVATEQSVLFGEGDKPVDIFDTSDDR
CCCCCHHHHHHHHHHHCCCCEEECCHHHHHHCHHHHHHHHHEEECCCCCCEEEEECCCCE
IRIVYFGFTRCPDVCPTSLAMLAGALNQIDDAQKAQLRPMFISLDPERDEADASAKYAHY
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHH
FHPMIEGLSAPLDVTTPLAHKYGVIFRKTELEGSELKYTLDHSSYFYFLKPNGTLITKVP
HHHHHHHCCCCCCCCCCHHHHCCEEEEEECCCCCEEEEEEECCCEEEEECCCCEEEEECC
HTLTPAPIVEAITKLTAEGKTNES
CCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRNWSLFLVVAFVLGFGTKTYLDGQKEVEKKPQQVATEQSVLFGEGDKPVDIFDTSDDR
CCCCHHHHHHHHHHHCCCCEEECCHHHHHHCHHHHHHHHHEEECCCCCCEEEEECCCCE
IRIVYFGFTRCPDVCPTSLAMLAGALNQIDDAQKAQLRPMFISLDPERDEADASAKYAHY
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHH
FHPMIEGLSAPLDVTTPLAHKYGVIFRKTELEGSELKYTLDHSSYFYFLKPNGTLITKVP
HHHHHHHCCCCCCCCCCHHHHCCEEEEEECCCCCEEEEEEECCCEEEEECCCCEEEEECC
HTLTPAPIVEAITKLTAEGKTNES
CCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA