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The map label for this gene is ygbI [C]

Identifier: 156975979

GI number: 156975979

Start: 18497

End: 19162

Strand: Reverse

Name: ygbI [C]

Synonym: VIBHAR_04749

Alternate gene names: 156975979

Gene position: 19162-18497 (Counterclockwise)

Preceding gene: 156975985

Following gene: 156975978

Centisome position: 0.87

GC content: 44.59

Gene sequence:

>666_bases
ATGACCATTCGCCGTGATATCGTAAAACTGGAATCCTCGGGTAAAGTCGTTTCTGTTTCTGGTGGAGTGCAACTGGCTCA
GGCTTTACATTCTGAGCTTTCCCATGACGCTAAAGTCGAGCAACAAGCGGATGAGAAGGTTCAAATTGGCAAACTTGCTG
CCACGTTAATTGGCAAAGACGCTACGATTTACTTGGATGCGGGAACCACCTCTCTAGAGATCGCCCACCAAATAGCGGAT
CGTGACGATCTATTAGTGATCACCAATGACTTCTCTATTGCGGGTTTCCTGATGACGCACAGTCAATGTGAGCTTTACCA
TACCGGAGGCAAAATTGATCGTGAGAACCAATCCACAGTTGGTGGAAAAGTCGCAGAGTTCTTGAACGGATTGAACATTG
ATATTGCCTTTATCTCTACGTCTTCTTGGAGTTTGAAGGGCTTATCAACGCCAAACGAAAACAAAGTCCTTGTGAAAAAG
GCCATCATCAAAGCGGCACAAACTAACTACCTTGTTTCTGACTCCACCAAATACGGCCAAATTGCCAGCTTTCATGCTTT
AAATATCGAGCAATTAGACGGCATCATTACCGATTCCAATCTGTCTGACGTAGTAACACAAGAGCTGATAGACAAAGGGT
TAAGTGTGATTAGAGGCGACCAATAA

Upstream 100 bases:

>100_bases
CATGATCCCAGCAGAACGTCAAAGAACCATCTTGTCCCTGTTATCACACCAAGAAGTGTTAAGCATTTCAGATTTAACCG
ACCACCTTGGCGTATCACAT

Downstream 100 bases:

>100_bases
CCCTCCTTCTCGCCTCAACAAACAAAGAGGCTTACCCGTTTTAGGTAAGCCTCGTTAACCTACCCAATAACACCTAAAAC
CTTGCCCAATGAGGGCTCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTIRRDIVKLESSGKVVSVSGGVQLAQALHSELSHDAKVEQQADEKVQIGKLAATLIGKDATIYLDAGTTSLEIAHQIAD
RDDLLVITNDFSIAGFLMTHSQCELYHTGGKIDRENQSTVGGKVAEFLNGLNIDIAFISTSSWSLKGLSTPNENKVLVKK
AIIKAAQTNYLVSDSTKYGQIASFHALNIEQLDGIITDSNLSDVVTQELIDKGLSVIRGDQ

Sequences:

>Translated_221_residues
MTIRRDIVKLESSGKVVSVSGGVQLAQALHSELSHDAKVEQQADEKVQIGKLAATLIGKDATIYLDAGTTSLEIAHQIAD
RDDLLVITNDFSIAGFLMTHSQCELYHTGGKIDRENQSTVGGKVAEFLNGLNIDIAFISTSSWSLKGLSTPNENKVLVKK
AIIKAAQTNYLVSDSTKYGQIASFHALNIEQLDGIITDSNLSDVVTQELIDKGLSVIRGDQ
>Mature_220_residues
TIRRDIVKLESSGKVVSVSGGVQLAQALHSELSHDAKVEQQADEKVQIGKLAATLIGKDATIYLDAGTTSLEIAHQIADR
DDLLVITNDFSIAGFLMTHSQCELYHTGGKIDRENQSTVGGKVAEFLNGLNIDIAFISTSSWSLKGLSTPNENKVLVKKA
IIKAAQTNYLVSDSTKYGQIASFHALNIEQLDGIITDSNLSDVVTQELIDKGLSVIRGDQ

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=217, Percent_Identity=49.3087557603687, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1789519, Length=220, Percent_Identity=28.1818181818182, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789829, Length=211, Percent_Identity=27.4881516587678, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789059, Length=218, Percent_Identity=30.2752293577982, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790753, Length=188, Percent_Identity=31.3829787234043, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87082344, Length=217, Percent_Identity=27.1889400921659, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787063, Length=206, Percent_Identity=29.126213592233, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788069, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790635, Length=219, Percent_Identity=24.6575342465753, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 23811; Mature: 23680

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRRDIVKLESSGKVVSVSGGVQLAQALHSELSHDAKVEQQADEKVQIGKLAATLIGKD
CCCHHHHEEECCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCC
ATIYLDAGTTSLEIAHQIADRDDLLVITNDFSIAGFLMTHSQCELYHTGGKIDRENQSTV
EEEEEECCCCHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCHH
GGKVAEFLNGLNIDIAFISTSSWSLKGLSTPNENKVLVKKAIIKAAQTNYLVSDSTKYGQ
HHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCEEHHHHHHHHHHHCCEEEECCCCCCC
IASFHALNIEQLDGIITDSNLSDVVTQELIDKGLSVIRGDQ
EEEEEECCHHHHCCEEECCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIRRDIVKLESSGKVVSVSGGVQLAQALHSELSHDAKVEQQADEKVQIGKLAATLIGKD
CCHHHHEEECCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCC
ATIYLDAGTTSLEIAHQIADRDDLLVITNDFSIAGFLMTHSQCELYHTGGKIDRENQSTV
EEEEEECCCCHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCHH
GGKVAEFLNGLNIDIAFISTSSWSLKGLSTPNENKVLVKKAIIKAAQTNYLVSDSTKYGQ
HHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCEEHHHHHHHHHHHCCEEEECCCCCCC
IASFHALNIEQLDGIITDSNLSDVVTQELIDKGLSVIRGDQ
EEEEEECCHHHHCCEEECCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]