Click here to switch to the map view.

The map label for this gene is rpl24p

Identifier: 156938196

GI number: 156938196

Start: 1269149

End: 1269526

Strand: Direct

Name: rpl24p

Synonym: Igni_1409

Alternate gene names: 156938196

Gene position: 1269149-1269526 (Clockwise)

Preceding gene: 156938195

Following gene: 156938197

Centisome position: 97.81

GC content: 52.91

Gene sequence:

>378_bases
GTGCCTATCCCCAAGTCCAAGAAGCCCAGCAAGCAGAGGAAGTTCCTCTACAACGCTCCCTTGCACTTGAGGCATAAGTT
CATGAACGCCCCCCTCAGCAAGGAGCTGAGGGAGAAGTACGGCGTCAAGAGGTTGCCGGTGAGAAAGGGCGACACCGTAA
AGATCGTCAGAGGGAAGTTCAGGGGCCACGAAGGAACGGTCGCCAAGGTAGACCTAAAGAAAGCGAGGATATACGTAGAC
GGCGCAACGATAGAGAACTCGAGGGGCGAGCAGAGGTTCTACCCCATCCACCCTTCGAAAGTGATTATAACCAAGCTAGG
TGAGGTCGACAAGGTAAGGCAAAAGATAATAGAGAGGAGGAAGAAGGAGGTGAAGTAA

Upstream 100 bases:

>100_bases
CCGAGGGGGTCGGAGATAAGGGGACCGGTCGCCCGCGAAGCGGTGGAAAGGTGGCCCAGGATAGGCAACGTGGCCAGCAT
AGTCGTGTGAGGTGAGCGCC

Downstream 100 bases:

>100_bases
AGTGGCAAGGGTAGGTGGAGGTAAAAGGCACCTAAAGAGGCTCGCCGCCCCGGCCTTCTGGCCCATTCATAGAAAGGAGG
CCGTCTGGGCGGTAAAGCCC

Product: 50S ribosomal protein L24P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MPIPKSKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVD
GATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERRKKEVK

Sequences:

>Translated_125_residues
MPIPKSKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVD
GATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERRKKEVK
>Mature_124_residues
PIPKSKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDG
ATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERRKKEVK

Specific function: Located at the polypeptide exit tunnel on the outside of the subunit

COG id: COG0198

COG function: function code J; Ribosomal protein L24

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L24P family

Homologues:

Organism=Homo sapiens, GI4506621, Length=114, Percent_Identity=49.1228070175439, Blast_Score=101, Evalue=1e-22,
Organism=Homo sapiens, GI7705813, Length=114, Percent_Identity=49.1228070175439, Blast_Score=101, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17535693, Length=115, Percent_Identity=43.4782608695652, Blast_Score=93, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17535691, Length=96, Percent_Identity=42.7083333333333, Blast_Score=80, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32564329, Length=96, Percent_Identity=42.7083333333333, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6323376, Length=110, Percent_Identity=43.6363636363636, Blast_Score=86, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321471, Length=110, Percent_Identity=43.6363636363636, Blast_Score=86, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357853, Length=113, Percent_Identity=46.9026548672566, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL24_IGNH4 (A8ACD3)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435992.1
- STRING:   A8ACD3
- GeneID:   5561806
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1409
- eggNOG:   arNOG11456
- HOGENOM:   HBG714769
- OMA:   FLYNAPL
- BioCyc:   IHOS453591:IGNI_1409-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01326_A
- InterPro:   IPR005824
- InterPro:   IPR005825
- InterPro:   IPR014723
- InterPro:   IPR005756
- InterPro:   IPR008991
- Gene3D:   G3DSA:2.30.30.200
- PANTHER:   PTHR11143
- SMART:   SM00739
- TIGRFAMs:   TIGR01080

Pfam domain/function: PF00467 KOW; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 14584; Mature: 14452

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: PS01108 RIBOSOMAL_L24

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPKSKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKF
CCCCCCCCCCCHHHEEECCCHHHHHHHHCCCCCHHHHHHCCCEECCCCCCCEEEEEEEEC
RGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERR
CCCCCCEEEEEEEEEEEEECCCEEECCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHH
KKEVK
HHCCC
>Mature Secondary Structure 
PIPKSKKPSKQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKF
CCCCCCCCCCHHHEEECCCHHHHHHHHCCCCCHHHHHHCCCEECCCCCCCEEEEEEEEC
RGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERR
CCCCCCEEEEEEEEEEEEECCCEEECCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHH
KKEVK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA