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The map label for this gene is rps4e

Identifier: 156938197

GI number: 156938197

Start: 1269528

End: 1270295

Strand: Direct

Name: rps4e

Synonym: Igni_1410

Alternate gene names: 156938197

Gene position: 1269528-1270295 (Clockwise)

Preceding gene: 156938196

Following gene: 156938198

Centisome position: 97.84

GC content: 53.78

Gene sequence:

>768_bases
GTGGCAAGGGTAGGTGGAGGTAAAAGGCACCTAAAGAGGCTCGCCGCCCCGGCCTTCTGGCCCATTCATAGAAAGGAGGC
CGTCTGGGCGGTAAAGCCCCGGCCGGGTCCCCACCCCATAGAGGAGAGCATACCGCTACTGATACTCGTCAGGGACGTGC
TCGGATACGCCGAGACCTCTAGGGAAGCGAGGAAGTTGATAGCAGAGGGCAGAATAAAGGTTGATGGAAGAGTAAGGAAG
GACTACAAGTTCCCCGTAGGCGCCATGGACGTAATAGAGATCGTAGGGGCCGACGAGTACTACCGCATGATCCCGTACCC
AGTCAAGTACCTAGTACCCATGAGGATAGATGCAGAAGAGGCCAAGAAGAAGATCTGTAGAATAGAAAACAAGGTGACAG
TTAAGGGCGGTCACGTCCAGTTGAACTTACACGACGGCAGGAACGTGTTGATAAGGGTAGAAGACCCGCGCAACCCCGTA
GAGGCCCAAGAGTACAAGACCTTGGGCGGCTTACTCATAACGGTGCCCGAGCAAGAGATCTTGGACTACGTCCCCTTCGA
GGAGGGAGTAATCGCAATAGTGAAGTCTGGGAGGAACGTAGGAAGGGTCGGGAGGATAGAGGAAATCGTGAAAGGGATGG
GACGGAAGAAGACTCTAGTTAAGATGAGGGACGTACACGACGAAGTGTTTTACACCGTCGCTGAGTACGTATTCCCAATA
GGGAAGGAAGAGCCCTTGATAAAGTTGCCGGAGGGTGCTTGGAAATGA

Upstream 100 bases:

>100_bases
TACCCCATCCACCCTTCGAAAGTGATTATAACCAAGCTAGGTGAGGTCGACAAGGTAAGGCAAAAGATAATAGAGAGGAG
GAAGAAGGAGGTGAAGTAAA

Downstream 100 bases:

>100_bases
GCGCGGAGTTGGAAGTTAAGCGCTTAGAGGTTCCCCTCCCTCCCGAAAGGGTTGAAGAGATACTGAAGAGGTGGGAACAA
CAGCCTATGCTGAAGCCCAG

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRK
DYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPV
EAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPI
GKEEPLIKLPEGAWK

Sequences:

>Translated_255_residues
MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRK
DYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPV
EAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPI
GKEEPLIKLPEGAWK
>Mature_254_residues
ARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKD
YKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVE
AQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIG
KEEPLIKLPEGAWK

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506725, Length=253, Percent_Identity=35.9683794466403, Blast_Score=140, Evalue=9e-34,
Organism=Homo sapiens, GI4506727, Length=253, Percent_Identity=35.1778656126482, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI88703062, Length=253, Percent_Identity=34.3873517786561, Blast_Score=136, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17543386, Length=249, Percent_Identity=39.7590361445783, Blast_Score=161, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6322605, Length=254, Percent_Identity=36.6141732283465, Blast_Score=142, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6321997, Length=254, Percent_Identity=36.6141732283465, Blast_Score=142, Evalue=6e-35,
Organism=Drosophila melanogaster, GI24663672, Length=254, Percent_Identity=38.9763779527559, Blast_Score=153, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24663668, Length=254, Percent_Identity=38.9763779527559, Blast_Score=153, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_IGNH4 (A8ACD4)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435993.1
- ProteinModelPortal:   A8ACD4
- STRING:   A8ACD4
- GeneID:   5561802
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1410
- eggNOG:   arNOG06304
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- BioCyc:   IHOS453591:IGNI_1410-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 28957; Mature: 28826

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETS
CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHH
REARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEE
HHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHHCCCHHEEECCCCEEEEEEEEECHHH
AKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEI
HHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCEEEEECHHHH
LDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPI
HHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GKEEPLIKLPEGAWK
CCCCCEEECCCCCCC
>Mature Secondary Structure 
ARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETS
CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHH
REARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEE
HHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHHCCCHHEEECCCCEEEEEEEEECHHH
AKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEI
HHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCEEEEECHHHH
LDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPI
HHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GKEEPLIKLPEGAWK
CCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA